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View Structure Prediction Details

Protein: gi|221317443
Organism: Bacillus subtilis subsp. subtilis str. JH642
Length: 544 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221317443.

Description E-value Query
Range
Subject
Range
gi|1063254, gi|2... - pir||I39858 germination response gerKA protein - Bacillus subtilis, gi|1063254|dbj|BAA11254.1| GerK...
762.0 [0..1] [544..3]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFSKRKNN TDSKDKQNTD ERNQEQQQEK ERPVLISPSL AKNIAETKKE VGSSSDVIIR  60
   61 EIKIGEQDHV HLAVIYISGL VDNNTIHESL IDPLVQDESI QNTHAIQQIL EKTLPLGGVK 120
  121 AEKSWDKLFS ELMLGNALIF ADGHDEALIC STQGGEQRSI QEPSTQVSFR GPRQGFTESL 180
  181 QTNISMIRRY IKNPNLWVEK MKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVTNTDIAL MYIQGICDEK VLKEVKQRLE KIDIDSILES GYIEQLIEDE TFTTFPTMYH  60
   61 TERPDVVAGN LLEGRFAIIV DGTPFVLIAP ALFVQFFQSV EDYYSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDIATSIRIL RVLVFFISLV APAVYVAATT FHQEMIPTQL LVVIAAQREI VPFPAVVEAL  60
   61 TMEVAFEILR EAGVRLPRVV GSAVSIVGAL VIGQAAVQAG IVSPAMVIIV ALTAIASFAT 120
  121 PAFAMAISAR LIRFIFIIAS AVMGFYGLIL GIIMMFVHLC SLRSFGVPYM SPLAPFSSQG 180
  181 VKDALFRVPW WADEKRPESV SKEDKVRQGK DQRPEPAASR GMVNKDLEEG DQNGT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle