YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5053113, gi\|1...
Organism:	Chlamydomonas reinhardtii
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5053113, gi|1....

Description	E-value	Query Range	Subject Range
gi\|91084329 - gi\|91084329\|ref\|XP_972528.1\| PREDICTED: similar to Serine/threonine-protein phosphatase alpha-1 isof...	359.0	[0..2]	[299..8490]
gsp-2 - status:Confirmed UniProt:P48727 protein_id:AAK18957.1	350.0	[0..1]	[299..3]
gi\|157749933 - gi\|157749933\|ref\|XP_001678680.1\| Hypothetical protein CBG00598 [Caenorhabditis briggsae AF16] CRE12319, FL81_2... - RP42462 WBGene00066428 locus:Cre-gsp-2 status:Partially_confirmed, null GLC7B_CAEBR - Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1	350.0	[0..2]	[299..4]
PP11_ACEPE - Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia peniculus PE=3 SV=1	349.0	[0..1]	[301..1]
gi\|5917726 - gi\|5917726\|gb\|AAD56010.1\|AF178530_1 serine/threonine protein phosphatase 1; PP1 [Malus x domestica]	348.0	[0..1]	[301..9]
gi\|51761892, gi\|... - gi\|82914133\|ref\|XP_919795.1\| PREDICTED: similar to protein phosphatase 1, catalytic subunit, gamma i... gi\|149063383, gi... - gi\|50927621\|gb\|AAH78825.1\| Ppp1cc protein [Rattus norvegicus], gi\|227435\|prf\|\|1703469C protein phosp...	348.0	[0..1]	[299..4]
gi\|109098732 - gi\|109098732\|ref\|XP_001108258.1\| PREDICTED: similar to protein phosphatase 1, catalytic subunit, gam... gi\|114607966, gi... - gi\|114646942\|ref\|XP_518561.2\| PREDICTED: similar to protein phosphatase 1 gamma2 isoform 4 [Pan trog... gi\|119618344, gi... - pir\|\|S35700 phosphoprotein phosphatase (EC 3.1.3.16) 1-gamma catalytic chain, splice form 2 - human,...	348.0	[0..1]	[299..4]
gi\|2117989, gi\|2... - gi\|220873\|dbj\|BAA14197.1\| protein phosphatase 1, catalytic subunit [Rattus norvegicus], gi\|2117989\|p...	348.0	[0..1]	[299..4]
gi\|1535 - gi\|1535\|emb\|CAA30645.1\| unnamed protein product [Oryctolagus cuniculus]	347.0	[0..2]	[299..5]
gi\|999339 - gi\|999339\|gb\|AAB34333.1\| protein phosphatase 1 alpha; PP1 alpha [Rattus sp.] PP1A_RABIT - Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA ... PPP1CA - protein phosphatase 1, catalytic subunit, alpha isozyme ENSMMUG000000172... - null, null PP1A_BOVIN - Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1 IPI:IPI00323370.... - Ensembl_locations(Chr-bp):None Serine/threonine protein phosphatase PP1-alpha 1 catalytic subunit PP1A_RAT - Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1... gi\|60656413 - gi\|60656413\|gb\|AAX32770.1\| protein phosphatase 1 catalytic subunit alpha isoform [synthetic construc... HGNC:9281\|MIM:17... - phosphatase 1, catalytic subunit, alpha isozyme gi\|87621715, gi\|... - gi\|87621715\|gb\|ABD38708.1\| protein phosphatase 1 catalytic subunit alpha isoform [Sus scrofa], gi\|11...	347.0	[0..2]	[299..5]

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Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIAQVDEII ERLLDVRNGR PGKQVQLAEN EIRLLCLTAK EIFMSQPNLL ELEAPIKICG  60
   61 DIHGQYSDLL RLFEYGGFPP EANYLFLGDY VDRGKQSLET ICLLLSFKIK YPENFFLLRG 120
  121 NHECASINRI YGFYDECKRR YNIRLWRTFT DCFNCLPVAA LIDEKILCMH GGLSPELKSL 180
  181 EQIKRITRPT DVPDSGLLCD LLWADPDKDI QGWGENDRGV SYTFGPDCVT EFLQKHDLDL 240
  241 VCRAHQVVEE GYEFFAKRQL VTIFSAPNYC GEFENAGAMM SVDETLMCSF QILKPAETKA 300
  301 KGRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.522879
Match:	1fjmA
Description:	Protein phosphatase-1 (PP-1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits