YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213850390
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213850390.

Description	E-value	Query Range	Subject Range
gi\|81240934, gi\|... - gi\|82776786\|ref\|YP_403135.1\| cytoplasmic asparaginase I [Shigella dysenteriae Sd197], gi\|81240934\|gb...	0.0	[1..338]	[1..338]
gi\|168770732, gi... - gi\|189360324\|gb\|EDU78743.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4486], gi\|168770732\|re... gi\|187769442, gi... - gi\|187769442\|gb\|EDU33286.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4196], gi\|168774925\|re... gi\|73855392, gi\|... - gi\|74311915\|ref\|YP_310334.1\| cytoplasmic asparaginase I [Shigella sonnei Ss046], gi\|73855392\|gb\|AAZ8... gi\|189000367, gi... - gi\|189000367\|gb\|EDU69353.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4076], gi\|168782191\|re... gi\|168788172, gi... - gi\|189371969\|gb\|EDU90385.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC869], gi\|168788172\|ref... gi\|168801077, gi... - gi\|189376715\|gb\|EDU95131.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC508], gi\|168801077\|ref... gi\|170019886, gi... - gi\|170019886\|ref\|YP_001724840.1\| cytoplasmic asparaginase I [Escherichia coli ATCC 8739], gi\|1697548... ASPG1_ECO57 - L-asparaginase 1 OS=Escherichia coli O157:H7 GN=ansA PE=3 SV=1 gi\|169889259, gi... - gi\|170081424\|ref\|YP_001730744.1\| cytoplasmic L-asparaginase I [Escherichia coli str. K-12 substr. DH... EG10045 - cytoplasmic L-asparaginase 1 / L-asparaginase 1, cytoplasmic, low affinity gi\|170520221, gi... - gi\|170682503\|ref\|YP_001743482.1\| L-asparaginase 1 [Escherichia coli SMS-3-5], gi\|170520221\|gb\|ACB183... gi\|83586064, gi\|... - gi\|83586064\|ref\|ZP_00924702.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157158977, gi... - gi\|75190798\|ref\|ZP_00704065.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|194433483, gi... - gi\|83569626\|ref\|ZP_00921077.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|75236766, gi\|... - gi\|75236766\|ref\|ZP_00720837.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|193065788, gi... - gi\|75256167\|ref\|ZP_00727863.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|188016257, gi... - gi\|188016257\|gb\|EDU54379.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4113], gi\|168749410\|re... gi\|194413433, gi... - gi\|75210252\|ref\|ZP_00710420.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|189356163, gi... - gi\|189356163\|gb\|EDU74582.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4401], gi\|168756778\|re... gi\|75227740, gi\|... - gi\|75227740\|ref\|ZP_00714472.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|189367424, gi... - gi\|189367424\|gb\|EDU85840.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4501], gi\|168762160\|re... ASPG1_ECOLI, ASG... - L-asparaginase 1 (EC 3.5.1.1) (L-asparaginase I) (L-asparagine amidohydrolase I) (L-ASNase I) - Esch... gi\|218352058, gi... - gi\|218695326\|ref\|YP_002402993.1\| cytoplasmic asparaginase I [Escherichia coli 55989], gi\|218352058\|e... gi\|254793386, gi... - gi\|254793386\|ref\|YP_003078223.1\| cytoplasmic L-asparaginase I [Escherichia coli O157:H7 str. TW14359... gi\|218699667, gi... - gi\|218699667\|ref\|YP_002407296.1\| cytoplasmic asparaginase I [Escherichia coli IAI39], gi\|218369653\|e... gi\|254161825, gi... - gi\|254161825\|ref\|YP_003044933.1\| cytoplasmic asparaginase I [Escherichia coli B str. REL606], gi\|253... gi\|218705265, gi... - gi\|218705265\|ref\|YP_002412784.1\| cytoplasmic asparaginase I [Escherichia coli UMN026], gi\|218432362\|... gi\|254288613, gi... - gi\|254288613\|ref\|YP_003054361.1\| cytoplasmic asparaginase I [Escherichia coli BL21(DE3)], gi\|2539779... gi\|242377488, gi... - gi\|251785215\|ref\|YP_002999519.1\| hypothetical protein B21_01724 [Escherichia coli BL21], gi\|24237748... gi\|238900981, gi... - gi\|238900981\|ref\|YP_002926777.1\| cytoplasmic L-asparaginase I [Escherichia coli BW2952], gi\|23886071... gi\|89108606, gi\|... - gi\|89108606\|ref\|AP_002386.1\| cytoplasmic L-asparaginase I [Escherichia coli str. K-12 substr. W3110]... gi\|13361941, gi\|... - gi\|15831728\|ref\|NP_310501.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|195937454 - gi\|195937454\|ref\|ZP_03082836.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 str. EC4024] gi\|208724828, gi... - gi\|208810312\|ref\|ZP_03252188.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4206], gi\|20872482... gi\|208731342, gi... - gi\|208816999\|ref\|ZP_03258119.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4045], gi\|20873134... gi\|208820019, gi... - gi\|208820019\|ref\|ZP_03260339.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4042], gi\|20874014... EG10045 - cytoplasmic L-asparaginase 1 / L-asparaginase 1, cytoplasmic, low affinity gi\|209161040, gi... - gi\|209399640\|ref\|YP_002270839.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4115], gi\|2091610... gi\|209912388, gi... - gi\|209919129\|ref\|YP_002293213.1\| cytoplasmic asparaginase I [Escherichia coli SE11], gi\|209912388\|db... gi\|215265055, gi... - gi\|215486983\|ref\|YP_002329414.1\| cytoplasmic asparaginase I [Escherichia coli O127:H6 str. E2348/69]... gi\|217328832, gi... - gi\|217328832\|ref\|ZP_03444913.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. TW14588], gi\|2173181... gi\|124529953, gi... - gi\|124529953\|ref\|ZP_01700765.1\| L-asparaginases, type I [Escherichia coli B], gi\|124499506\|gb\|EAY469...	0.0	[1..338]	[1..338]
gi\|187428127, gi... - gi\|75177305\|ref\|ZP_00697394.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[1..338]	[1..338]
gi\|115513062, gi... - gi\|117623938\|ref\|YP_852851.1\| cytoplasmic asparaginase I [Escherichia coli APEC O1], gi\|115513062\|gb... gi\|218365404, gi... - gi\|218558635\|ref\|YP_002391548.1\| cytoplasmic asparaginase I [Escherichia coli S88], gi\|218365404\|emb... gi\|91072558, gi\|... - gi\|91210984\|ref\|YP_540970.1\| cytoplasmic asparaginase I [Escherichia coli UTI89], gi\|91072558\|gb\|ABE... gi\|226900475, gi... - gi\|237705718\|ref\|ZP_04536199.1\| cytoplasmic asparaginase I [Escherichia sp. 3_2_53FAA], gi\|226900475...	0.0	[1..338]	[1..338]
gi\|167552355, gi... - gi\|205322964\|gb\|EDZ10803.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|167991891, gi... - gi\|205329738\|gb\|EDZ16502.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16419811, gi\|... - gi\|16764645\|ref\|NP_460260.1\| cytoplasmic asparaginase I [Salmonella typhimurium LT2], gi\|16419811\|gb... gi\|161363668, gi... - gi\|161614304\|ref\|YP_001588270.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica ser... gi\|194712595, gi... - gi\|194737093\|ref\|YP_002114311.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Schwa... lcl\|NC_016856.1_... - [gene=ansA] [protein=asparaginase] [protein_id=YP_005237146.1] [location=complement(1381774..1382790... gi\|205332679, gi... - gi\|205332679\|gb\|EDZ19443.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168238959, gi... - gi\|197288240\|gb\|EDY27625.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Schwarzeng...	0.0	[1..338]	[1..338]
gi\|82543828, gi\|... - gi\|82543828\|ref\|YP_407775.1\| cytoplasmic asparaginase I [Shigella boydii Sb227], gi\|81245239\|gb\|ABB6...	0.0	[1..338]	[1..338]
gi\|75513737, gi\|... - gi\|75513737\|ref\|ZP_00736113.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157161229, gi... - gi\|75195835\|ref\|ZP_00705905.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[1..338]	[1..338]
gi\|24051772, gi\|... - gi\|24112836\|ref\|NP_707346.1\| cytoplasmic asparaginase I [Shigella flexneri 2a str. 301], gi\|24051772... gi\|30062970, gi\|... - gi\|30062970\|ref\|NP_837141.1\| cytoplasmic asparaginase I [Shigella flexneri 2a str. 2457T], gi\|300412...	0.0	[1..338]	[1..338]
gi\|110343481, gi... - gi\|110641889\|ref\|YP_669619.1\| cytoplasmic asparaginase I [Escherichia coli 536], gi\|110343481\|gb\|ABG... gi\|75241358, gi\|... - gi\|75241358\|ref\|ZP_00725209.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|227885805, gi... - gi\|227885805\|ref\|ZP_04003610.1\| cytoplasmic asparaginase I [Escherichia coli 83972], gi\|227837378\|gb... gi\|26248025, gi\|... - gi\|26248025\|ref\|NP_754065.1\| cytoplasmic asparaginase I [Escherichia coli CFT073], gi\|26108428\|gb\|AA... gi\|218689708, gi... - gi\|218689708\|ref\|YP_002397920.1\| cytoplasmic asparaginase I [Escherichia coli ED1a], gi\|218427272\|em...	0.0	[1..338]	[1..338]
gi\|205359996, gi... - gi\|205359996\|ref\|ZP_03224486.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Weltev... gi\|205359353, gi... - gi\|205359353\|ref\|ZP_03224275.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Heidel... gi\|199603505, gi... - gi\|200391060\|ref\|ZP_03217671.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Vircho... gi\|197263504, gi... - gi\|197263504\|ref\|ZP_03163578.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Saintp... gi\|197248895, gi... - gi\|197248895\|ref\|YP_002146745.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Agona... gi\|194450194, gi... - gi\|194450194\|ref\|YP_002045300.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica ser... gi\|194402688, gi... - gi\|194444025\|ref\|YP_002040551.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Newpo... gi\|62179886, gi\|... - gi\|62179886\|ref\|YP_216303.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica serovar... gi\|224468717, gi... - gi\|224584190\|ref\|YP_002637988.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica ser... gi\|205360699, gi... - gi\|205360699\|ref\|ZP_03224694.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Hadar ...	0.0	[1..338]	[25..362]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKKSIYVAY TGGTIGMQRS DKGYIPVSGR LQRQLALMPE FHRPEMPDFT IHEYAPLMDS  60
   61 SDMTPEDWQH IAADIKAHYD EYDGFVILHG TDTMAYTASA LSFMLENLGK PVIVTGSQIP 120
  121 LAELRSDGQI NLLNALYVAA NYPVNEVTLF FNNRLFRGNR TTKAHADGFD AFASPNLPPL 180
  181 LEAGIHIRRL NTPPAPYGSG ELIVHPITPQ PIGVVTIYPG ISAEVVRNFL RQPVKALILR 240
  241 SYGVGNAPQN KAFLQELKEA SSRGIVVVNL TQCMSGRVNM GGYATGNALA HAGVIGGADM 300
  301 TVEATLTKLH YLLSQGLDTQ AIRSAMAQNL RGELTPDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	2p2dA
Description:	No description for 2p2dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits