| Protein: | gi|221315563 |
| Organism: | Bacillus subtilis subsp. subtilis str. NCIB 3610 |
| Length: | 541 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221315563.
| Description | E-value | Query Range |
Subject Range |
|
|
345.0 | [0..29] | [538..1460] |
|
Region A: Residues: [1-464] |
1 11 21 31 41 51
| | | | | |
1 MKMSKEGKQS KRTLLITGLI IAMFFSALDG TIVGTAMPKI VGDLGGLSMM TWLTTAYLLT 60
61 STTIVPIAGK LADLLGRRIV YVSGLIIFMA ASALCGMANN MTELIIFRGL QGIGGGIMMP 120
121 MAMIVIGDLF TGKQRAKFQG VFGAIYGLAS VIGPQIGGWI VDSLNWKWVF YINLPVGIIA 180
181 VIFIARGLQG RQQTGPINFD IAGIFTMIVG VVSLLLALSF GGKDYAWDSW QILGLFALAL 240
241 IGIVSFIIVE SKAKEPILPM YLFKNRTFTF LNLIGFFMSI GMFGAITFVP FFMQGIVGVS 300
301 ASESGTIMTP MMISMIITSI IGGQLVYKIG IKPQIITGML VMAGGFLLLT TLDLDTSKLV 360
361 ATSFMAIIGL GMGLVMPILT LALQESFSKE ELGVVTSSSQ FFRSIGGTFG ITMLGAVMNA 420
421 RSGNLLTDKL VPYLDSLPAQ ASSFAAQLKG MIDTNPQGLL QSLF
|
| Detection Method: |  |
| Confidence: | 26.30103 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.3426261924492 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.29689809004391 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.15783210522667 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 1.94035843948137 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.5181741634556 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.01584233411372 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
|
Region A: Residues: [465-541] |
1 11 21 31 41 51
| | | | | |
1 SPDAVKQIPA AFSSHIVPIL KTSLMDSLHS VFYTGLIFIA VGAVFTLFLK PIKLSNKKAE 60
61 DQQEKEKAAK AVESPSH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
