YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168241500, gi...
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL486
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168241500, gi....

Description	E-value	Query Range	Subject Range
gi\|26248106, gi\|... - gi\|26248106\|ref\|NP_754146.1\| DNA polymerase III, theta subunit [Escherichia coli CFT073], gi\|2610850... gi\|24052188, gi\|... - ref\|NP_707705.1\| DNA polymerase III theta subunit [Shigella flexneri 2a str. 301], gb\|AAN43412.1\| D... gi\|237705794, gi... - gi\|237705794\|ref\|ZP_04536275.1\| DNA polymerase III theta subunit [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110343552, gi... - gi\|110641960\|ref\|YP_669690.1\| DNA polymerase III subunit theta [Escherichia coli 536], gi\|110343552\|... gi\|91211065, gi\|... - gi\|91211065\|ref\|YP_541051.1\| DNA polymerase III theta subunit [Escherichia coli UTI89], gi\|91072639\|...	9.0E-29	[1..76]	[30..105]
gi\|217318086, gi... - gi\|217328739\|ref\|ZP_03444820.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. TW1... gi\|215265127, gi... - gi\|215487055\|ref\|YP_002329486.1\| DNA polymerase III subunit theta [Escherichia coli O127:H6 str. E23... gi\|218558706, gi... - gi\|218558706\|ref\|YP_002391619.1\| DNA polymerase III subunit theta [Escherichia coli S88], gi\|2183654... gi\|218554416, gi... - gi\|218554416\|ref\|YP_002387329.1\| DNA polymerase III subunit theta [Escherichia coli IAI1], gi\|218361... gi\|218695408, gi... - gi\|218695408\|ref\|YP_002403075.1\| DNA polymerase III subunit theta [Escherichia coli 55989], gi\|21835... gi\|218689780, gi... - gi\|218689780\|ref\|YP_002397992.1\| DNA polymerase III subunit theta [Escherichia coli ED1a], gi\|218427... gi\|218432438, gi... - gi\|218705341\|ref\|YP_002412860.1\| DNA polymerase III subunit theta [Escherichia coli UMN026], gi\|2184... gi\|218369573, gi... - gi\|218699587\|ref\|YP_002407216.1\| DNA polymerase III subunit theta [Escherichia coli IAI39], gi\|21836... gi\|75511812, gi\|... - gi\|75511812\|ref\|ZP_00734430.1\| hypothetical protein Ecol5_01003928 [Escherichia coli 53638], gi\|1884... gi\|74311835, gi\|... - gi\|74311835\|ref\|YP_310254.1\| DNA polymerase III subunit theta [Shigella sonnei Ss046], gi\|73855312\|g... gi\|75239737, gi\|... - gi\|75239737\|ref\|ZP_00723700.1\| hypothetical protein EcolF_01002934 [Escherichia coli F11], gi\|191173... gi\|193066074, gi... - gi\|75255857\|ref\|ZP_00727596.1\| hypothetical protein EcolE2_01004125 [Escherichia coli E22], gi\|19306... gi\|81240575, gi\|... - gi\|82776427\|ref\|YP_402776.1\| DNA polymerase III subunit theta [Shigella dysenteriae Sd197], gi\|81240... gi\|56383524, gi\|... - gi\|56479973\|ref\|NP_707705.2\| DNA polymerase III subunit theta [Shigella flexneri 2a str. 301], gi\|56... gi\|194439023, gi... - gi\|83585557\|ref\|ZP_00924201.1\| hypothetical protein Ecol1_01003287 [Escherichia coli 101-1], gi\|1944... gi\|75190871, gi\|... - gi\|75190871\|ref\|ZP_00704138.1\| hypothetical protein EcolE_01004184 [Escherichia coli E24377A], gi\|15... gi\|75228304, gi\|... - gi\|75228304\|ref\|ZP_00714956.1\| hypothetical protein EcolB7_01003381 [Escherichia coli B7A], gi\|19116... gi\|192956804, gi... - gi\|75235354\|ref\|ZP_00719580.1\| hypothetical protein EcolE1_01002906 [Escherichia coli E110019], gi\|1... gi\|157066989, gi... - gi\|75195907\|ref\|ZP_00705977.1\| hypothetical protein EcolH_01001711 [Escherichia coli HS], gi\|1571613... gi\|194412293, gi... - gi\|75209112\|ref\|ZP_00709367.1\| hypothetical protein EcolB_01003717 [Escherichia coli B171], gi\|19442... HOLE_ECOL6 - DNA polymerase III subunit theta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=h... EG11505 - DNA polymerase III, theta subunit / DNA polymerase III, theta subunit gi\|168752093, gi... - gi\|188013967\|gb\|EDU52089.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4113]... gi\|162138428 - gi\|162138428\|ref\|YP_541051.2\| DNA polymerase III subunit theta [Escherichia coli UTI89] gi\|238860836, gi... - gi\|238901057\|ref\|YP_002926853.1\| DNA polymerase III, theta subunit [Escherichia coli BW2952], gi\|238... gi\|242377563, gi... - gi\|251785290\|ref\|YP_002999594.1\| hypothetical protein B21_01801 [Escherichia coli BL21], gi\|24237756... gi\|253773203, gi... - gi\|254288690\|ref\|YP_003054438.1\| DNA polymerase III, theta subunit [Escherichia coli BL21(DE3)], gi\|... gi\|254161902, gi... - gi\|254161902\|ref\|YP_003045010.1\| DNA polymerase III, theta subunit [Escherichia coli B str. REL606],... gi\|170680257, gi... - gi\|170680257\|ref\|YP_001743403.1\| DNA polymerase III, theta subunit [Escherichia coli SMS-3-5], gi\|17... gi\|254592866, gi... - gi\|254793466\|ref\|YP_003078303.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. TW... gi\|169889333, gi... - gi\|170081498\|ref\|YP_001730818.1\| DNA polymerase III, theta subunit [Escherichia coli str. K-12 subst... gi\|208810613, gi... - gi\|208810613\|ref\|ZP_03252489.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4... gi\|195939743 - gi\|195939743\|ref\|ZP_03085125.1\| DNA polymerase III subunit theta [Escherichia coli O157:H7 str. EC40... gi\|208739600, gi... - gi\|208819477\|ref\|ZP_03259797.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4... gi\|208816530, gi... - gi\|208816530\|ref\|ZP_03257650.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4... gi\|209912467, gi... - gi\|209919208\|ref\|YP_002293292.1\| DNA polymerase III subunit theta [Escherichia coli SE11], gi\|209912... gi\|209162110, gi... - gi\|209400710\|ref\|YP_002270924.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC... gi\|168762365, gi... - gi\|189367323\|gb\|EDU85739.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4501]... gi\|89108682, gi\|... - gi\|89108682\|ref\|AP_002462.1\| DNA polymerase III, theta subunit [Escherichia coli str. K-12 substr. W... gi\|168758578, gi... - gi\|189354612\|gb\|EDU73031.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4401]... gi\|13362020, gi\|... - gi\|15831806\|ref\|NP_310579.1\| DNA polymerase III subunit theta [Escherichia coli O157:H7 str. Sakai],... gi\|187767060, gi... - gi\|187767060\|gb\|EDU30904.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4196]... gi\|189360267, gi... - gi\|189360267\|gb\|EDU78686.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4486]... gi\|168788261, gi... - gi\|189371932\|gb\|EDU90348.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC869],... gi\|188999477, gi... - gi\|188999477\|gb\|EDU68463.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4076]... gi\|170019813, gi... - gi\|170019813\|ref\|YP_001724767.1\| DNA polymerase III subunit theta [Escherichia coli ATCC 8739], gi\|1... gi\|168802380, gi... - gi\|189375615\|gb\|EDU94031.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC508],... HOLE_ECOLI - DNA polymerase III theta subunit (EC 2.7.7.7) - Escherichia coli HOLE_SHIFL - DNA polymerase III subunit theta OS=Shigella flexneri GN=holE PE=3 SV=1 gi\|124530964, gi... - gi\|124530964\|ref\|ZP_01701420.1\| DNA polymerase II, beta subunit [Escherichia coli B], gi\|124498859\|g... gi\|30063254, gi\|... - gi\|30063254\|ref\|NP_837425.1\| DNA polymerase III subunit theta [Shigella flexneri 2a str. 2457T], gi\|... HOLE_ECO57 - DNA polymerase III subunit theta OS=Escherichia coli O157:H7 GN=holE PE=3 SV=1 EG11505 - DNA polymerase III, theta subunit / DNA polymerase III, theta subunit gi\|12515892, gi\|... - gi\|15802255\|ref\|NP_288279.1\| DNA polymerase III subunit theta [Escherichia coli O157:H7 EDL933], gi\|... HOLE_ECOL6 - DNA polymerase III subunit theta OS=Escherichia coli O6 GN=holE PE=3 SV=1	6.0E-28	[1..76]	[1..76]
gi\|36786013, gi\|... - gi\|37526581\|ref\|NP_929925.1\| DNA polymerase III subunit theta [Photorhabdus luminescens subsp. laumo...	8.0E-28	[1..76]	[1..76]
gi\|75175679, gi\|... - gi\|75175679\|ref\|ZP_00695885.1\| hypothetical protein SboyB_01004275 [Shigella boydii BS512], gi\|18773... gi\|81245074, gi\|... - gi\|82543663\|ref\|YP_407610.1\| DNA polymerase III subunit theta [Shigella boydii Sb227], gi\|81245074\|g...	1.0E-27	[1..76]	[1..76]
gi\|110615335, gi... - gi\|110805787\|ref\|YP_689307.1\| DNA polymerase III subunit theta [Shigella flexneri 5 str. 8401], gi\|1...	1.0E-27	[1..76]	[1..76]
gi\|8569331 - gi\|8569331\|pdb\|1DU2\|A Chain A, Solution Structure Of The Theta Subunit Of Dna Polymerase Iii	2.0E-27	[2..76]	[2..76]
gi\|166961828, gi... - gi\|167420133\|ref\|ZP_02311886.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Orientalis... gi\|167425812, gi... - gi\|167425812\|ref\|ZP_02317565.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Mediaevali... gi\|167467445 - gi\|167467445\|ref\|ZP_02332149.1\| DNA polymerase III, theta subunit [Yersinia pestis FV-1] gi\|229897884, gi... - gi\|229897884\|ref\|ZP_04513035.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Orientalis... Q66BV8\|Q66BV8_YERPS - DNA polymerase III, theta subunit - Yersinia pseudotuberculosis gi\|170024664, gi... - gi\|170024664\|ref\|YP_001721169.1\| DNA polymerase III subunit theta [Yersinia pseudotuberculosis YPIII... gi\|229693494, gi... - gi\|229897157\|ref\|ZP_04512313.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Orientalis... gi\|186698121, gi... - gi\|186895095\|ref\|YP_001872207.1\| DNA polymerase III subunit theta [Yersinia pseudotuberculosis PB1/+... gi\|229701146, gi... - gi\|229896223\|ref\|ZP_04511393.1\| DNA polymerase III, theta subunit [Yersinia pestis Pestoides A], gi\|... gi\|161484782 - gi\|161484782\|ref\|NP_669830.2\| DNA polymerase III subunit theta [Yersinia pestis KIM] gi\|165927985, gi... - gi\|165927985\|ref\|ZP_02223817.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Orientalis... gi\|166010887, gi... - gi\|166010887\|ref\|ZP_02231785.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Antiqua st... gi\|166210894, gi... - gi\|166210894\|ref\|ZP_02236929.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Antiqua st... gi\|167401076, gi... - gi\|167401076\|ref\|ZP_02306579.1\| DNA polymerase III, theta subunit [Yersinia pestis biovar Antiqua st... gi\|162420884, gi... - gi\|77635136\|ref\|ZP_00797224.1\| COG0184: Ribosomal protein S15P/S13E [Yersinia pestis Angola], gi\|162... gi\|152960745, gi... - gi\|77628858\|ref\|ZP_00791444.1\| COG0184: Ribosomal protein S15P/S13E [Yersinia pseudotuberculosis IP ... gi\|89104585, gi\|... - gi\|89104585\|ref\|ZP_01177124.1\| COG0184: Ribosomal protein S15P/S13E [Yersinia pestis biovar Oriental... gi\|108779066, gi... - gi\|108807153\|ref\|YP_651069.1\| DNA polymerase III subunit theta [Yersinia pestis Antiqua], gi\|1087790... gi\|229680331, gi... - gi\|229902884\|ref\|ZP_04518001.1\| DNA polymerase III, theta subunit [Yersinia pestis Nepal516], gi\|229... gi\|45436289, gi\|... - gi\|45441428\|ref\|NP_992967.1\| DNA polymerase III subunit theta [Yersinia pestis biovar Microtus str. ... gi\|25514768 - pir\|\|AD0217 DNA-directed DNA polymerase (EC 2.7.7.7) theta chain [imported] - Yersinia pestis (strai... gi\|218928904, gi... - gi\|218928904\|ref\|YP_002346779.1\| DNA polymerase III subunit theta [Yersinia pestis CO92], gi\|1612203... gi\|145210325, gi... - gi\|145598629\|ref\|YP_001162705.1\| DNA polymerase III subunit theta [Yersinia pestis Pestoides F], gi\|... gi\|51589276, gi\|... - gi\|51595994\|ref\|YP_070185.1\| DNA polymerase III subunit theta [Yersinia pseudotuberculosis IP 32953]... gi\|149292682, gi... - gi\|149366269\|ref\|ZP_01888304.1\| DNA polymerase III, theta subunit [Yersinia pestis CA88-4125], gi\|14...	5.0E-26	[1..76]	[1..76]
gi\|50121400, gi\|... - gi\|50121400\|ref\|YP_050567.1\| DNA polymerase III subunit theta [Pectobacterium atrosepticum SCRI1043]...	7.0E-26	[1..76]	[1..76]
gi\|238789014, gi... - gi\|77972298\|ref\|ZP_00827868.1\| hypothetical protein YfreA_01003904 [Yersinia frederiksenii ATCC 3364...	4.0E-25	[1..76]	[1..76]
gi\|238715695, gi... - gi\|77959091\|ref\|ZP_00823114.1\| hypothetical protein YberA_01000636 [Yersinia bercovieri ATCC 43970],...	6.0E-25	[1..76]	[1..76]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTNLAQLEQ AEMDKVNVDL AAAGVAFKER YNMPVVAEAV EREQPEHLRA WFRERLIAHR  60
   61 LASVSLSRLP YEPKVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1du2A
Description:	Theta subunit of DNA polymerase III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits