YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168237823, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168237823, gi....

Description	E-value	Query Range	Subject Range
gi\|75257127, gi\|... - gi\|75257127\|ref\|ZP_00728663.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|194425837, gi... - gi\|75212656\|ref\|ZP_00712654.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	127.0	[0..1]	[117..1]
gi\|218431840, gi... - gi\|218704743\|ref\|YP_002412262.1\| hypothetical protein ECUMN_1518 [Escherichia coli UMN026], gi\|21843... gi\|110343042, gi... - gi\|110641450\|ref\|YP_669180.1\| putative ACR involved in intracellular sulfur reduction [Escherichia c... gi\|226899940, gi... - gi\|237705183\|ref\|ZP_04535664.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227836561, gi... - gi\|227886357\|ref\|ZP_04004162.1\| dsrE family protein [Escherichia coli 83972], gi\|227836561\|gb\|EEJ470... gi\|26107946, gi\|... - gi\|26247544\|ref\|NP_753584.1\| hypothetical protein c1679 [Escherichia coli CFT073], gi\|26107946\|gb\|AA... gi\|190908776, gi... - gi\|75242023\|ref\|ZP_00725817.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|91072016, gi\|... - gi\|91210442\|ref\|YP_540428.1\| hypothetical protein UTI89_C1415 [Escherichia coli UTI89], gi\|91072016\|...	127.0	[0..1]	[117..1]
gi\|82776562, gi\|... - gi\|82776562\|ref\|YP_402911.1\| hypothetical protein SDY_1271 [Shigella dysenteriae Sd197], gi\|81240710... gi\|82544326, gi\|... - gi\|82544326\|ref\|YP_408273.1\| hypothetical protein SBO_1847 [Shigella boydii Sb227], gi\|81245737\|gb\|A... gi\|124528395, gi... - gi\|124528395\|ref\|ZP_01699705.1\| DsrE family protein [Escherichia coli B], gi\|124500627\|gb\|EAY48098.1... gi\|191166625, gi... - gi\|75230219\|ref\|ZP_00716720.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... YCHN_ECOLI - Protein ychN - Escherichia coli gi\|73855918, gi\|... - gi\|74312441\|ref\|YP_310860.1\| hypothetical protein SSON_1958 [Shigella sonnei Ss046], gi\|73855918\|gb\|... gi\|238860300, gi... - gi\|238900453\|ref\|YP_002926249.1\| hypothetical protein BWG_1047 [Escherichia coli BW2952], gi\|2388603... gi\|251784728, gi... - gi\|251784728\|ref\|YP_002999032.1\| hypothetical protein B21_01207 [Escherichia coli BL21], gi\|24237700... gi\|24051523, gi\|... - gi\|24112618\|ref\|NP_707128.1\| hypothetical protein SF1222 [Shigella flexneri 2a str. 301], gi\|2405152... gi\|253977419, gi... - gi\|254288112\|ref\|YP_003053860.1\| hypothetical protein ECD_01197 [Escherichia coli BL21(DE3)], gi\|253... YCHN_SHIFL - Protein YchN OS=Shigella flexneri GN=ychN PE=3 SV=1 gi\|254161304, gi... - gi\|254161304\|ref\|YP_003044412.1\| hypothetical protein ECB_01197 [Escherichia coli B str. REL606], gi... gi\|194417514, gi... - gi\|83569305\|ref\|ZP_00920761.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|157077855, gi... - gi\|75190273\|ref\|ZP_00703540.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|75195372, gi\|... - gi\|75195372\|ref\|ZP_00705442.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|194424079, gi... - gi\|83587363\|ref\|ZP_00925991.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|75179182, gi\|... - gi\|75179182\|ref\|ZP_00699200.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|89108067, gi\|... - gi\|89108067\|ref\|AP_001847.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|189372544, gi... - gi\|189372544\|gb\|EDU90960.1\| dsrE family protein [Escherichia coli O157:H7 str. EC869], gi\|168787725\|... gi\|168764373, gi... - gi\|189365620\|gb\|EDU84036.1\| dsrE family protein [Escherichia coli O157:H7 str. EC4501], gi\|168764373... gi\|169888685, gi... - gi\|170080850\|ref\|YP_001730170.1\| hypothetical protein ECDH10B_1278 [Escherichia coli str. K-12 subst... gi\|170020411, gi... - gi\|170020411\|ref\|YP_001725365.1\| DsrE family protein [Escherichia coli ATCC 8739], gi\|169755339\|gb\|A... gi\|15830978, gi\|... - gi\|15830978\|ref\|NP_309751.1\| hypothetical protein ECs1724 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209918463, gi... - gi\|209918463\|ref\|YP_002292547.1\| hypothetical protein ECSE_1272 [Escherichia coli SE11], gi\|20991172... gi\|110614774, gi... - gi\|110805226\|ref\|YP_688746.1\| hypothetical protein SFV_1235 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|170684178, gi... - gi\|170684178\|ref\|YP_001743973.1\| dsrE family protein [Escherichia coli SMS-3-5], gi\|170521896\|gb\|ACB... gi\|217328204, gi... - gi\|217328204\|ref\|ZP_03444286.1\| dsrE family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|215264524, gi... - gi\|215486452\|ref\|YP_002328883.1\| hypothetical protein E2348C_1343 [Escherichia coli O127:H6 str. E23... YCHN_ECO57 - Protein YchN OS=Escherichia coli O157:H7 GN=ychN PE=3 SV=1 gi\|30040991, gi\|... - gi\|30062743\|ref\|NP_836914.1\| hypothetical protein S1306 [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|15801450, gi\|... - gi\|15801450\|ref\|NP_287467.1\| hypothetical protein Z1994 [Escherichia coli O157:H7 EDL933], gi\|125149... EG12404 - putative sulfur relay protein / Predicted sulfur relay protein; dimer of trimers EG12404 - putative sulfur relay protein / Predicted sulfur relay protein; dimer of trimers gi\|218351467, gi... - gi\|218694735\|ref\|YP_002402402.1\| hypothetical protein EC55989_1317 [Escherichia coli 55989], gi\|2183... gi\|218553774, gi... - gi\|218553774\|ref\|YP_002386687.1\| hypothetical protein ECIAI1_1241 [Escherichia coli IAI1], gi\|218360... gi\|218699928, gi... - gi\|218699928\|ref\|YP_002407557.1\| hypothetical protein ECIAI39_1557 [Escherichia coli IAI39], gi\|2183...	127.0	[0..1]	[117..1]
Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 10... Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri GN=MK0008 PE=4 SV=1	127.0	[0..4]	[117..10]
gi\|192956729, gi... - gi\|75235269\|ref\|ZP_00719506.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	125.0	[0..1]	[117..1]
gi\|218364918, gi... - gi\|218558149\|ref\|YP_002391062.1\| hypothetical protein ECS88_1288 [Escherichia coli S88], gi\|21836491... gi\|115512561, gi... - gi\|117623437\|ref\|YP_852350.1\| hypothetical protein APECO1_336 [Escherichia coli APEC O1], gi\|1155125...	125.0	[0..1]	[117..1]
gi\|224583741, gi... - gi\|224583741\|ref\|YP_002637539.1\| hypothetical protein SPC_1962 [Salmonella enterica subsp. enterica ... gi\|194444372, gi... - gi\|194444372\|ref\|YP_002041019.1\| protein YchN [Salmonella enterica subsp. enterica serovar Newport s... gi\|168462755, gi... - gi\|195633951\|gb\|EDX52303.1\| protein YchN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|62127966, gi\|... - gi\|62180333\|ref\|YP_216750.1\| hypothetical protein SC1763 [Salmonella enterica subsp. enterica serova...	122.0	[0..1]	[117..1]
gi\|24158750, gi\|... - gi\|24158750\|pdb\|1JX7\|F Chain F, Crystal Structure Of Ychn Protein From E.Coli, gi\|24158749\|pdb\|1JX7\|...	122.0	[0..2]	[117..2]
gi\|5931359 - gi\|5931359\|gb\|AAD56714.1\| YchN protein [Klebsiella pneumoniae]	120.0	[0..1]	[117..1]
Y989_METJA - Uncharacterized protein MJ0989 OS=Methanocaldococcus jannaschii GN=MJ0989 PE=4 SV=1 Y989_METJA - Uncharacterized protein MJ0989 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-...	119.0	[0..3]	[117..2]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNIVIIANG AAYGSESLFN SLRLAIALRE QESHLDLRLF LMSDAVTAGL RGQKPAEGYN  60
   61 IQQMLEILTA QNVPVKLCKT CADGRGITPL PLIDGVEIGT LVELAQWTLA ADKVLTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	1jx7A
Description:	Hypothetical protein YchN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits