YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221323988
Organism:	Bacillus subtilis subsp. subtilis str. SMY
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221323988.

Description	E-value	Query Range	Subject Range
gi\|58583749, gi\|... - gi\|58583749\|ref\|YP_202765.1\| hypothetical protein XOO4126 [Xanthomonas oryzae pv. oryzae KACC10331],...	152.0	[0..1]	[148..51]
gi\|67918522, gi\|... - gi\|67918522\|ref\|ZP_00512119.1\| GatB/Yqey [Chlorobium limicola DSM 245], gi\|67783841\|gb\|EAM43223.1\| G...	151.0	[0..1]	[147..54]
gi\|28271450, gi\|... - gi\|28378614\|ref\|NP_785506.1\| hypothetical protein lp_1972 [Lactobacillus plantarum WCFS1], gi\|282714... gi\|227856781, gi... - gi\|227894896\|ref\|ZP_04012701.1\| glutaminyl-tRNA synthase b subunit [Lactobacillus plantarum subsp. p...	151.0	[0..1]	[148..1]
gi\|56421031, gi\|... - gi\|56421031\|ref\|YP_148349.1\| hypothetical protein GK2496 [Geobacillus kaustophilus HTA426], gi\|56380...	149.0	[0..1]	[148..1]
gi\|69245352, gi\|... - gi\|69245352\|ref\|ZP_00603396.1\| GatB/Yqey [Enterococcus faecium DO], gi\|68195882\|gb\|EAN10317.1\| GatB/...	147.0	[0..1]	[147..1]
gi\|10173971, gi\|... - gi\|15613918\|ref\|NP_242221.1\| hypothetical protein BH1355 [Bacillus halodurans C-125], gi\|10173971\|db... gi\|25307006 - pir\|\|C83819 hypothetical protein BH1355 [imported] - Bacillus halodurans (strain C-125)	147.0	[0..1]	[148..1]
gi\|110598389, gi... - gi\|110598389\|ref\|ZP_01386662.1\| GatB/Yqey [Chlorobium ferrooxidans DSM 13031], gi\|110339998\|gb\|EAT58...	147.0	[0..1]	[148..24]
gi\|172056853, gi... - gi\|68054490\|ref\|ZP_00538647.1\| GatB/Yqey [Exiguobacterium sibiricum 255-15], gi\|68008896\|gb\|EAM88116...	147.0	[0..1]	[147..1]
gi\|7227210, gi\|1... - gi\|7227210\|gb\|AAF42280.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15677781\|... gi\|11353087 - pir\|\|H81023 conserved hypothetical protein NMB1951 [imported] - Neisseria meningitidis (strain MC58 ...	147.0	[0..1]	[148..33]
gi\|116103020, gi... - gi\|48870717\|ref\|ZP_00323436.1\| COG1610: Uncharacterized conserved protein [Pediococcus pentosaceus A...	145.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLERLNQD MKLYMKNREK DKLTVVRMVK ASLQNEAIKL KKDSLTEDEE LTVLSRELKQ  60
   61 RKDSLQEFSN ANRLDLVDKV QKELDILEVY LPEQLSEEEL RTIVNETIAE VGASSKADMG 120
  121 KVMGAIMPKV KGKADGSLIN KLVSSQLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1ng6A
Description:	Hypothetical protein YqeY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits