YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218752069
Organism:	Mycobacterium tuberculosis GM 1503
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218752069.

Description	E-value	Query Range	Subject Range
PSS_MYCLE - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium leprae GN=pssA PE=3 SV=1 PSS_MYCLE - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium leprae (strain TN) GN=pssA PE=... gi\|221229555, gi... - gi\|221229555\|ref\|YP_002502971.1\| putative CDP-diacylglycerol-serine o-phosphatidyltransferase [Mycob...	207.0	[0..1]	[285..1]
gi\|76785720, gi\|... - gi\|76785720\|ref\|ZP_00772884.1\| COG1183: Phosphatidylserine synthase [Mycobacterium tuberculosis F11]...	203.0	[0..1]	[286..3]
PSS_MYCBO - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium bovis GN=pssA PE=3 SV=1 gi\|219556255 - gi\|219556255\|ref\|ZP_03535331.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|215444532 - gi\|215444532\|ref\|ZP_03431284.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|224988822, gi... - gi\|224988822\|ref\|YP_002643509.1\| putative CDP-diacylglycerol--serine O-phosphatidyltransferase [Myco... gi\|215409952 - gi\|215409952\|ref\|ZP_03418760.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|215402188 - gi\|215402188\|ref\|ZP_03414369.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|215429259 - gi\|215429259\|ref\|ZP_03427178.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... PSS_MYCTO - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 ... gi\|215425657 - gi\|215425657\|ref\|ZP_03423576.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|197739217, gi... - gi\|254363400\|ref\|ZP_04979446.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... gi\|121491997, gi... - gi\|121636350\|ref\|YP_976573.1\| putative CDP-diacylglycerol--serine o-phosphatidyltransferase pssA [My... gi\|194542838, gi... - gi\|254230786\|ref\|ZP_04924113.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... PSS_MYCBO - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / A...	202.0	[0..1]	[286..1]
gi\|13879956, gi\|... - gi\|15839824\|ref\|NP_334861.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium tub... gi\|81255742 - gi\|81255742\|ref\|ZP_00880212.1\| COG1183: Phosphatidylserine synthase [Mycobacterium tuberculosis C]	202.0	[0..1]	[286..3]
gi\|118463227, gi... - gi\|118463227\|ref\|YP_883841.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium av... gi\|41410027, gi\|... - gi\|41410027\|ref\|NP_962863.1\| hypothetical protein MAP3929c [Mycobacterium avium subsp. paratuberculo...	192.0	[0..1]	[286..1]
gi\|68548599, gi\|... - gi\|68548599\|ref\|ZP_00588081.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella amaz...	176.0	[0..5]	[255..6]
gi\|78360297, gi\|... - gi\|78367652\|ref\|ZP_00837917.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella sp. ...	174.0	[0..11]	[266..12]
gi\|85694935, gi\|... - gi\|85711022\|ref\|ZP_01042082.1\| Phosphatidylserine synthase [Idiomarina baltica OS145], gi\|85694935\|g...	173.0	[0..7]	[252..13]
gi\|90022183, gi\|... - gi\|90022183\|ref\|YP_528010.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Saccharophagus de...	172.0	[0..3]	[267..33]
gi\|67159494, gi\|... - gi\|67159494\|ref\|ZP_00420012.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Azotobacter vin... gi\|67159494, gi\|... - gi\|67159494\|ref\|ZP_00420012.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Azotobacter vin...	172.0	[0..9]	[247..36]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKPRGRRG VNLQILPSAM TVLSICAGLT AIKFALEHQP KAAMALIAAA AILDGLDGRV  60
   61 ARILDAQSRM GAEIDSLADA VNFGVTPALV LYVSMLSKWP VGWVVVLLYA VCVVLRLARY 120
  121 NALQDDGTQP AYAHEFFVGM PAPAGAVSMI GLLALKMQFG EGWWTSGWFL SFWVTGTSIL 180
  181 LVSGIPMKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.60206
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHAVSVPPNY AAALLAVLAI CAAAAVLAPY LLIWVIIIAY MCHIPFAVRS QRWLAQHPEV  60
   61 WDDKPKQRRA VRRASRRAHP YRPSMARLGL RKPGRRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits