YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190689717, gi...
Organism:	synthetic construct
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190689717, gi....

Description	E-value	Query Range	Subject Range
gi\|80478782 - gi\|80478782\|gb\|AAI08955.1\| CCAAT/enhancer binding protein (C/EBP), epsilon [Mus musculus]	1.0E-46	[1..281]	[1..281]
CEBPE_RAT - CCAAT/enhancer-binding protein epsilon OS=Rattus norvegicus GN=Cebpe PE=1 SV=2	2.0E-46	[1..281]	[1..281]
gi\|109082934 - gi\|109082934\|ref\|XP_001106328.1\| PREDICTED: similar to CCAAT/enhancer binding protein epsilon [Macac...	3.0E-46	[1..281]	[1..281]
gi\|1399175, gi\|3... - sp\|Q15744\|CEBE_HUMAN CCAAT/enhancer binding protein epsilon (C/EBP epsilon), gi\|1399175\|gb\|AAC50708...	2.0E-45	[1..281]	[1..281]
gi\|114652112 - gi\|114652112\|ref\|XP_001161080.1\| PREDICTED: CCAAT/enhancer binding protein epsilon [Pan troglodytes]	6.0E-45	[1..281]	[1..281]
gi\|61842141 - gi\|61842141\|ref\|XP_614092.1\| PREDICTED: similar to CCAAT-enhancer binding protein epsilon gene [Bos ...	6.0E-45	[1..281]	[1..281]
CEBPE_SHEEP - CCAAT/enhancer-binding protein epsilon OS=Ovis aries GN=CEBPE PE=2 SV=1	7.0E-45	[1..281]	[1..281]
gi\|57090429 - gi\|57090429\|ref\|XP_547729.1\| PREDICTED: similar to CCAAT/enhancer binding protein epsilon [Canis fam...	7.0E-45	[1..280]	[1..280]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGTYYECE PRGGQQPLEF SGGRAGPGEL GDMCEHEASI DLSAYIESGE EQLLSDLFAV  60
   61 KPAPEARGLK GPGTPAFPHY LPPDPRPFAY PPHTFGPDRK ALGPGIYSSP GSYDPRAVAV 120
  121 KEEPRGPEGS RAASRGSYNP LQYQVAHCGQ TAMHLPPTLA APGQPLRVLK APLATAAPPC 180
  181 SPLLKAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPAGPLHKGK KAVNKDSLEY RLRRERNNIA VRKSRDKAKR RILETQQKVL EYMAENERLR  60
   61 SRVEQLTQEL DTLRNLFRQI PEAANLIKGV GGCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits