YRC Public Data Repository - Protein Structure Prediction

Protein:	FABP6_RAT
Organism:	Rattus norvegicus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABP6_RAT.

Description	E-value	Query Range	Subject Range
gi\|114658435 - gi\|114658435\|ref\|XP_001142851.1\| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...	164.0	[0..2]	[126..247]
FABPH_PIG - Fatty acid-binding protein, heart OS=Sus scrofa GN=FABP3 PE=2 SV=3	152.0	[0..2]	[128..4]
FABPH_RAT - Fatty acid-binding protein, heart OS=Rattus norvegicus GN=Fabp3 PE=1 SV=2	152.0	[0..2]	[128..4]
FABP7_CHICK - Fatty acid-binding protein, brain OS=Gallus gallus GN=FABP7 PE=2 SV=2	151.0	[0..2]	[126..4]
gi\|226536920, gi... - gi\|39939390\|gb\|AAR32738.1\| fatty acid-binding protein [Capra hircus], gi\|226536920\|gb\|ACO72586.1\| he...	151.0	[0..2]	[128..4]
gi\|24987402 - gi\|24987402\|pdb\|1JJX\|A Chain A, Solution Structure Of Recombinant Human Brain-Type Fatty Acid Bindin...	151.0	[0..2]	[126..3]
CCDS5127.1_1 - null gi\|109072829, gi... - gi\|109072829\|ref\|XP_001108559.1\| PREDICTED: fatty acid binding protein 7, brain isoform 2 [Macaca mu... gi\|90082527 - gi\|90082527\|dbj\|BAE90445.1\| unnamed protein product [Macaca fascicularis]	151.0	[0..2]	[126..4]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTGKYEFE SEKNYDEFMK RLGLPDEVIE RGRNFKIITE VQQDGENFTW SQSYSGGNIM  60
   61 SNKFTIGKEC EMQTMGGKKF KATVKMEGGK VVADFPNYHQ TSEVVGDKLV EISTIGDVTY 120
  121 ERVSKRVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.154902
Match:	1ealA
Description:	NMR STUDY OF ILEAL LIPID BINDING PROTEIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits