YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213425413
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	720 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425413.

Description	E-value	Query Range	Subject Range
gi\|2625021 - gi\|2625021\|gb\|AAC46278.1\| DNA helicase II [Serratia marcescens]	0.0	[1..720]	[1..720]
gi\|75177773 - gi\|75177773\|ref\|ZP_00697838.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella boydii BS512]	0.0	[1..720]	[19..738]
gi\|75238266 - gi\|75238266\|ref\|ZP_00722265.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E11001... gi\|75197699 - gi\|75197699\|ref\|ZP_00707769.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli HS]	0.0	[1..720]	[19..738]
gi\|91074912, gi\|... - gi\|91213338\|ref\|YP_543324.1\| DNA helicase II [Escherichia coli UTI89], gi\|91074912\|gb\|ABE09793.1\| DN... gi\|226902993, gi... - gi\|237702822\|ref\|ZP_04533303.1\| DNA helicase II [Escherichia sp. 3_2_53FAA], gi\|226902993\|gb\|EEH8925... gi\|26110983, gi\|... - gi\|26250553\|ref\|NP_756593.1\| DNA helicase II [Escherichia coli CFT073], gi\|26110983\|gb\|AAN83167.1\|AE... gi\|83585938 - gi\|83585938\|ref\|ZP_00924577.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli 101-1] gi\|75236878 - gi\|75236878\|ref\|ZP_00720947.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli F11]	0.0	[1..720]	[19..738]
gi\|226838716, gi... - gi\|254039025\|ref\|ZP_04873076.1\| DNA helicase II [Escherichia sp. 1_1_43], gi\|226838716\|gb\|EEH70744.1... gi\|75256260 - gi\|75256260\|ref\|ZP_00727938.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E22] gi\|75209557 - gi\|75209557\|ref\|ZP_00709778.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli B171] gi\|83569352 - gi\|83569352\|ref\|ZP_00920807.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella dysenteriae 10...	0.0	[1..720]	[19..738]
gi\|238912954 - gi\|238912954\|ref\|ZP_04656791.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serov... gi\|56130062, gi\|... - gi\|56415805\|ref\|YP_152880.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar ... gi\|62130053, gi\|... - gi\|62182420\|ref\|YP_218837.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar ... gi\|224470294, gi... - gi\|224585766\|ref\|YP_002639565.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Paraty... gi\|206710956, gi... - gi\|207859153\|ref\|YP_002245804.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|204930325, gi... - gi\|204930325\|ref\|ZP_03221302.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana... gi\|200388338, gi... - gi\|200388338\|ref\|ZP_03214950.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow... gi\|198245946, gi... - gi\|198245946\|ref\|YP_002217880.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin... gi\|197364735, gi... - gi\|197364735\|ref\|YP_002144372.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|194734777, gi... - gi\|194734777\|ref\|YP_002116880.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwar... gi\|194456900, gi... - gi\|194470536\|ref\|ZP_03076520.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentuck... gi\|194451500, gi... - gi\|194451500\|ref\|YP_002047963.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|194444550, gi... - gi\|194444550\|ref\|YP_002043181.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Newpor... gi\|205340965, gi... - gi\|205340965\|gb\|EDZ27729.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden... gi\|205348080, gi... - gi\|205348080\|gb\|EDZ34711.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. ... gi\|205336527, gi... - gi\|205336527\|gb\|EDZ23291.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg ... gi\|168238404, gi... - gi\|197288763\|gb\|EDY28138.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengr... gi\|168233884, gi... - gi\|205332069\|gb\|EDZ18833.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|161366434, gi... - gi\|161617070\|ref\|YP_001591035.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero...	0.0	[1..720]	[1..720]
gi\|75230777 - gi\|75230777\|ref\|ZP_00717240.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli B7A]	0.0	[1..720]	[19..738]
gi\|77978540, gi\|... - gi\|77978540\|ref\|ZP_00833968.1\| COG0210: Superfamily I DNA and RNA helicases [Yersinia intermedia ATC...	0.0	[1..720]	[1..720]
gi\|75188558 - gi\|75188558\|ref\|ZP_00701825.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E24377...	0.0	[1..720]	[19..738]
gi\|75512628, gi\|... - gi\|75512628\|ref\|ZP_00735140.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli 53638]... gi\|170022164, gi... - gi\|170022164\|ref\|YP_001727118.1\| DNA-dependent helicase II [Escherichia coli ATCC 8739], gi\|16975709... gi\|124499215, gi... - gi\|124530449\|ref\|ZP_01701107.1\| DNA helicase II [Escherichia coli B], gi\|124499215\|gb\|EAY46708.1\| DN... gi\|157163290, gi... - gi\|157163290\|ref\|YP_001460608.1\| DNA-dependent helicase II [Escherichia coli HS], gi\|157068970\|gb\|AB... gi\|192958573, gi... - gi\|193067953\|ref\|ZP_03048918.1\| DNA helicase II [Escherichia coli E110019], gi\|192958573\|gb\|EDV89011... gi\|218363145, gi... - gi\|218556376\|ref\|YP_002389290.1\| DNA-dependent helicase II [Escherichia coli IAI1], gi\|218363145\|emb...	0.0	[1..720]	[1..720]

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Predicted Domain #1

Region A:
Residues: [1-720]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSYLLDSL NDKQREAVAA PRSNMLVLAG AGSGKTRVLV HRIAWLLSVE NNSPYSIMAV  60
   61 TFTNKAAAEM RHRIGQLMGT SQGGMWVGTF HGLAHRLLRA HHMDANLPQD FQILDSEDQM 120
  121 RLLKRLIKAM NLDEKQWPPR QAMWYINSQK DEGLRPHHIQ SYGNPVEQTW QKVYQAYQEA 180
  181 CDRAGLVDFA ELLLRAHELW LNKPHILQHY RERFTNILVD EFQDTNNIQY AWVRLLAGDT 240
  241 GKVMIVGDDD QSIYGWRGAQ VENIQRFLND FPGAQTIRLE QNYRSTSNIL SVANALIENN 300
  301 NGRLGKKLWT DGVDGEPISL YCAFNELDEA RFVVNRIKTW QDNGGALAQC AILYRSNAQS 360
  361 RVLEEALLQA SMPYRIYGGM RFFERQEIKD ALSYLRLIAN RNDDAAFERV VNTPTRGIGD 420
  421 RTLDVVRQTS RDRQLTLWQA CRELLQEKAL AGRAASALQR FMELIDALAQ ETADMPLHVQ 480
  481 TDRVIKDSGL RTMYEQEKGE KGQTRIENLE ELVTATRQFS YNDEDEDLMP LQAFLSHAAL 540
  541 EAGEGQADTW QDAVQLMTLH SAKGLEFPQV FIVGMEEGMF PSQMSLDEGW RLEEERRLAY 600
  601 VGVTRAMQKL TLTYAETRRL YGKEVYHRPS RFIGELPEEC VEEVRLRATV SRPVSHQRMG 660
  661 TPLAENDTGY KLGQRVRHAK FGEGTIVNLE GSGEHSRLQV AFQGQGIKWL VAAYAKLETV 720
  721

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	163.0
Match:	2is1A
Description:	No description for 2is1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits