YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213163062
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213163062.

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=ydiZ] [protein=putative cytoplasmic protein] [protein_id=YP_005237184.1] [location=complement(... gi\|205329775, gi... - gi\|205329775\|gb\|EDZ16539.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|16764676, gi\|... - gi\|16764676\|ref\|NP_460291.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419843\|... gi\|197264177, gi... - gi\|197264177\|ref\|ZP_03164251.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se...	175.0	[0..1]	[96..1]
gi\|197362612, gi... - gi\|197362612\|ref\|YP_002142249.1\| hypothetical protein SSPA1410 [Salmonella enterica subsp. enterica ... gi\|56413689, gi\|... - gi\|56413689\|ref\|YP_150764.1\| hypothetical protein SPA1519 [Salmonella enterica subsp. enterica serov...	174.0	[0..1]	[96..1]
gi\|189404092, gi... - gi\|189404092\|ref\|ZP_02787218.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189403441, gi... - gi\|189403441\|ref\|ZP_02795493.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189377587, gi... - gi\|189405911\|ref\|ZP_02825101.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|189405093, gi... - gi\|189405093\|ref\|ZP_02813128.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|208724916, gi... - gi\|208810400\|ref\|ZP_03252276.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937408 - gi\|195937408\|ref\|ZP_03082790.1\| hypothetical protein EscherichcoliO157_13322 [Escherichia coli O157:... gi\|208738953, gi... - gi\|208818830\|ref\|ZP_03259150.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|13361897, gi\|... - gi\|15831684\|ref\|NP_310457.1\| hypothetical protein ECs2430 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208816609, gi... - gi\|208816609\|ref\|ZP_03257729.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|170081381, gi... - gi\|170081381\|ref\|YP_001730701.1\| hypothetical protein ECDH10B_1862 [Escherichia coli str. K-12 subst... gi\|170019929, gi... - gi\|170019929\|ref\|YP_001724883.1\| hypothetical protein EcolC_1908 [Escherichia coli ATCC 8739], gi\|16... gi\|188016312, gi... - gi\|188024858\|ref\|ZP_02774481.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|187776037, gi... - gi\|187776037\|ref\|ZP_02799981.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|189356213, gi... - gi\|189402341\|ref\|ZP_02781733.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189000269, gi... - gi\|189010439\|ref\|ZP_02807147.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... EG13985 - uncharacterized protein / Function unknown gi\|209919084, gi... - gi\|209919084\|ref\|YP_002293168.1\| hypothetical protein ECSE_1893 [Escherichia coli SE11], gi\|20991234... gi\|209396496, gi... - gi\|209396496\|ref\|YP_002270794.1\| hypothetical protein ECH74115_2442 [Escherichia coli O157:H7 str. E... gi\|218361058, gi... - gi\|218554290\|ref\|YP_002387203.1\| hypothetical protein ECIAI1_1782 [Escherichia coli IAI1], gi\|218361... gi\|217318392, gi... - gi\|217329045\|ref\|ZP_03445126.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218352015, gi... - gi\|218695283\|ref\|YP_002402950.1\| hypothetical protein EC55989_1891 [Escherichia coli 55989], gi\|2183... gi\|238862987, gi... - gi\|238900938\|ref\|YP_002926734.1\| hypothetical protein BWG_1537 [Escherichia coli BW2952], gi\|2388629... gi\|251785173, gi... - gi\|251785173\|ref\|YP_002999477.1\| hypothetical protein B21_01681 [Escherichia coli BL21], gi\|24237744... gi\|253324366, gi... - gi\|254288571\|ref\|YP_003054319.1\| hypothetical protein ECD_01693 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973684, gi... - gi\|254161783\|ref\|YP_003044891.1\| hypothetical protein ECB_01693 [Escherichia coli B str. REL606], gi... gi\|254793342, gi... - gi\|254793342\|ref\|YP_003078179.1\| hypothetical protein ECSP_2292 [Escherichia coli O157:H7 str. TW143... YDIZ_ECOLI - Hypothetical protein ydiZ - Escherichia coli EG13985 - uncharacterized protein / Function unknown YDIZ_ECO57 - Uncharacterized protein YdiZ OS=Escherichia coli O157:H7 GN=ydiZ PE=4 SV=1 gi\|81245282, gi\|... - gi\|82543871\|ref\|YP_407818.1\| hypothetical protein SBO_1366 [Shigella boydii Sb227], gi\|81245282\|gb\|A... gi\|85675092, gi\|... - gi\|89108563\|ref\|AP_002343.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|74311956, gi\|... - gi\|74311956\|ref\|YP_310375.1\| hypothetical protein SSON_1433 [Shigella sonnei Ss046], gi\|73855433\|gb\|... gi\|82777070, gi\|... - gi\|82777070\|ref\|YP_403419.1\| hypothetical protein SDY_1817 [Shigella dysenteriae Sd197], gi\|81241218... gi\|124499549, gi... - gi\|124529996\|ref\|ZP_01700808.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499549\|gb... gi\|187733790, gi... - gi\|75177349\|ref\|ZP_00697438.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Shigella boydii ... gi\|75190758, gi\|... - gi\|75190758\|ref\|ZP_00704025.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|83586024, gi\|... - gi\|83586024\|ref\|ZP_00924662.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|193068948, gi... - gi\|75236806\|ref\|ZP_00720877.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|75256127, gi\|... - gi\|75256127\|ref\|ZP_00727823.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|75195794, gi\|... - gi\|75195794\|ref\|ZP_00705864.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|194428564, gi... - gi\|75210209\|ref\|ZP_00710377.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	162.0	[0..1]	[94..1]
gi\|25496390 - gi\|25496390\|pir\|\|B85781 hypothetical protein Z2753 [imported] - Escherichia coli (strain O157:H7, s... gi\|12515737, gi\|... - gi\|15802135\|ref\|NP_288157.1\| hypothetical protein Z2753 [Escherichia coli O157:H7 EDL933], gi\|125157...	160.0	[0..1]	[94..1]
gi\|91210939, gi\|... - gi\|91210939\|ref\|YP_540925.1\| hypothetical protein UTI89_C1918 [Escherichia coli UTI89], gi\|91072513\|... gi\|115513021, gi... - gi\|117623897\|ref\|YP_852810.1\| hypothetical protein APECO1_794 [Escherichia coli APEC O1], gi\|1155130... gi\|218705222, gi... - gi\|218705222\|ref\|YP_002412741.1\| hypothetical protein ECUMN_2013 [Escherichia coli UMN026], gi\|21843... gi\|237705673, gi... - gi\|237705673\|ref\|ZP_04536154.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|170518633, gi... - gi\|170680915\|ref\|YP_001743525.1\| hypothetical protein EcSMS35_1467 [Escherichia coli SMS-3-5], gi\|17... gi\|215265014, gi... - gi\|215486942\|ref\|YP_002329373.1\| hypothetical protein E2348C_1853 [Escherichia coli O127:H6 str. E23... gi\|218558593, gi... - gi\|218558593\|ref\|YP_002391506.1\| hypothetical protein ECS88_1776 [Escherichia coli S88], gi\|21836536... gi\|218427230, gi... - gi\|218689666\|ref\|YP_002397878.1\| hypothetical protein ECED1_1927 [Escherichia coli ED1a], gi\|2184272...	160.0	[0..1]	[94..1]
gi\|190900939, gi... - gi\|75227714\|ref\|ZP_00714449.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	160.0	[0..1]	[94..1]
gi\|110641845, gi... - gi\|110641845\|ref\|YP_669575.1\| hypothetical protein ECP_1671 [Escherichia coli 536], gi\|110343437\|gb\|... gi\|191171770, gi... - gi\|75241400\|ref\|ZP_00725251.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|227837425, gi... - gi\|227885852\|ref\|ZP_04003657.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783742... gi\|26108380, gi\|... - gi\|26247977\|ref\|NP_754017.1\| hypothetical protein c2123 [Escherichia coli CFT073], gi\|26108380\|gb\|AA...	159.0	[0..1]	[94..1]
gi\|24112880, gi\|... - gi\|24112880\|ref\|NP_707390.1\| hypothetical protein SF1506 [Shigella flexneri 2a str. 301], gi\|2405182... gi\|30041258, gi\|... - gi\|30063009\|ref\|NP_837180.1\| hypothetical protein S1623 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|110615013, gi... - gi\|110805465\|ref\|YP_688985.1\| hypothetical protein SFV_1497 [Shigella flexneri 5 str. 8401], gi\|1106...	159.0	[0..1]	[94..1]
gi\|75513779 - gi\|75513779\|ref\|ZP_00736155.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	146.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGDITRYV ITVTFHEDSL TEINELNNHL TRSGFLLTLT DDEGNVHELG TNTFGFVSAQ  60
   61 SADEIKALVA GLAKSALDKD VDITVATWEA WSKNAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits