YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052116
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052116.

Description	E-value	Query Range	Subject Range
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	6.0E-45	[1..227]	[1..236]
gi\|254479401, gi... - gi\|254479401\|ref\|ZP_05092734.1\| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein [Carb... gi\|20517799, gi\|... - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong... gi\|20809120 - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong...	6.0E-43	[1..227]	[1..236]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	7.0E-43	[1..227]	[1..236]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	1.0E-42	[1..227]	[1..236]
gi\|221321318 - gi\|221321318\|ref\|ZP_03602612.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... gi\|221325601 - gi\|221325601\|ref\|ZP_03606895.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein soj OS=Bacillus subtilis GN=soj PE=1 SV=1 gi\|221316405 - gi\|221316405\|ref\|ZP_03598210.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) GN=soj PE=1 SV=1	1.0E-42	[1..227]	[1..236]
gi\|242256462, gi... - gi\|242256462\|ref\|ZP_04801353.1\| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X513], gi... gi\|114805264, gi... - gi\|167041014\|ref\|YP_001663999.1\| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514], ...	1.0E-42	[1..227]	[1..236]
gi\|76588899, gi\|... - gi\|76795585\|ref\|ZP_00777957.1\| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter ethanolicus A... gi\|241903130, gi... - gi\|241903130\|ref\|ZP_04787858.1\| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter brockii subsp...	4.0E-42	[1..227]	[1..236]
gi\|56422025, gi\|... - gi\|56422025\|ref\|YP_149343.1\| sporulation initiation inhibitor protein [Geobacillus kaustophilus HTA4... gi\|229497925, gi... - gi\|229497925\|ref\|ZP_04391624.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC52], gi\|22... gi\|221086934, gi... - gi\|221086934\|ref\|ZP_03556474.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC61], gi\|22...	5.0E-42	[1..227]	[1..236]
gi\|52788041, gi\|... - gi\|52788041\|ref\|YP_093870.1\| hypothetical protein BLi04369 [Bacillus licheniformis ATCC 14580], gi\|5...	1.0E-41	[1..227]	[1..236]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	2.0E-41	[1..227]	[1..236]

Back

Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRYFVTGT DTEVGKTVAS CALLQAATQL GYQTVGYKPV ASGSEMTTDG LRNSDALALQ  60
   61 RNSSLPQPYS AINPYTFAEP TSPHIASADE GRAIDAAVLS RGLRTLEAQA DWVLTEGAGG 120
  121 WFTPLSATLT FADWVQTEQL PVILVVGVKL GCINHAMLTA LAVEQAGLPL VGWIANDMQP 180
  181 PGARHGEYLA TLRRVIPAPL LGEIPWLGVS PSQAATGQYL DLSPLERA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.221849
Match:	1a82A
Description:	DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: