YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221323721
Organism:	Bacillus subtilis subsp. subtilis str. SMY
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221323721.

Description	E-value	Query Range	Subject Range
DER_LISMC - GTPase Der OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=der PE=3 SV=1 gi\|254825568 - gi\|254825568\|ref\|ZP_05230569.1\| GTP-binding protein EngA [Listeria monocytogenes FSL J1-194] ENGA_LISMC - GTP-binding protein engA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=engA PE=3 SV=1 gi\|254993214 - gi\|254993214\|ref\|ZP_05275404.1\| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064] gi\|254877945 - gi\|254877945\|ref\|ZP_05250655.1\| GTP-binding protein EngA [Listeria monocytogenes FSL J2-071] gi\|255028956 - gi\|255028956\|ref\|ZP_05300907.1\| GTP-binding protein EngA [Listeria monocytogenes LO28] gi\|153196444, gi... - gi\|254831462\|ref\|ZP_05236117.1\| GTP-binding protein EngA [Listeria monocytogenes 10403S], gi\|1531964... gi\|254899366, gi... - gi\|254899366\|ref\|ZP_05259290.1\| GTP-binding protein EngA [Listeria monocytogenes J0161], gi\|15318342... gi\|133726665, gi... - gi\|254871620\|ref\|ZP_05244330.1\| GTP-binding protein EngA [Listeria monocytogenes FSL N1-017], gi\|153... gi\|153191436, gi... - gi\|254912495\|ref\|ZP_05262507.1\| GTP-binding protein EngA [Listeria monocytogenes J2818], gi\|15319143... gi\|133732163, gi... - gi\|254936822\|ref\|ZP_05268519.1\| GTP-binding protein EngA [Listeria monocytogenes F6900], gi\|15317998... gi\|133729617, gi... - gi\|254827178\|ref\|ZP_05231865.1\| GTP-binding protein EngA [Listeria monocytogenes FSL N3-165], gi\|153... DER_LISMO, ENGA_... - GTP-binding protein engA OS=Listeria monocytogenes GN=engA PE=3 SV=1, GTPase Der OS=Listeria monocyt... gi\|133735000, gi... - gi\|254931892\|ref\|ZP_05265251.1\| GTP-binding protein EngA [Listeria monocytogenes HPB2262], gi\|153202... gi\|224501264 - gi\|224501264\|ref\|ZP_03669571.1\| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561] gi\|224498613 - gi\|224498613\|ref\|ZP_03666962.1\| GTP-binding protein EngA [Listeria monocytogenes Finland 1988] DER_LISMF - GTPase Der OS=Listeria monocytogenes serotype 4b (strain F2365) GN=der PE=3 SV=1 DER_LISMH - GTPase Der OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=der PE=3 SV=1 DER_LISMO - GTPase Der OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=der PE=3 SV=1	389.0	[0..1]	[436..1]

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Predicted Domain #1

Region A:
Residues: [1-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKPVVAIVG RPNVGKSTIF NRIAGERISI VEDTPGVTRD RIYSSAEWLN YDFNLIDTGG  60
   61 IDIGDEPFLA QIRQQAEIAM DEADVIIFMV NGREGVTAAD EEVAKILYRT KKPVVLAVNK 120
  121 LDNTEMRANI YDFYSLGFGE PYPISGTHGL GLGDLLDAVA EHFKNIPETK YNEEVIQFCL 180
  181 IGRPNVGKSS LVNAMLGEER VIVSNVAGTT RDAVDTSFTY NQQEFVIVDT AGMRKKGKVY 240
  241 ETTEKYSVLR ALKAIDRSEV VAVVLDGEEG IIEQDKRIAG YAHEAGKAVV IVVNKWDAVD 300
  301 KDESTMKEFE ENIRDHFQFL DYAPILFMSA LTKKRIHTLM PAIIKASENH SLRVQTNVLN 360
  361 DVIMDAVAMN PTPTHNGSRL KIYYATQVSV KPPSFVVFVN DPELMHFSYE RFLENRIRDA 420
  421 FGFEGTPIKI FARARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits