YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213425429
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425429.

Description	E-value	Query Range	Subject Range
gi\|62129435, gi\|... - gi\|62181802\|ref\|YP_218219.1\| protein-export membrane protein [Salmonella enterica subsp. enterica se...	9.0E-32	[1..110]	[66..175]
gi\|26110186, gi\|... - gi\|26249758\|ref\|NP_755798.1\| protein-export membrane protein [Escherichia coli CFT073], gi\|26110186\|... gi\|91212596, gi\|... - gi\|91212596\|ref\|YP_542582.1\| protein-export membrane protein SecG [Escherichia coli UTI89], gi\|91074...	9.0E-30	[1..109]	[17..125]
gi\|110807041, gi... - gi\|110807041\|ref\|YP_690561.1\| protein export - membrane protein [Shigella flexneri 5 str. 8401], gi\|...	1.0E-29	[1..109]	[26..134]
gi\|30142057 - gi\|30142057\|gb\|AAO17817.1\| SecG [Citrobacter rodentium]	1.0E-28	[1..110]	[1..110]
gi\|189367573, gi... - gi\|189367573\|gb\|EDU85989.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC45... gi\|189358577, gi... - gi\|189358577\|gb\|EDU76996.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC44... gi\|168773160, gi... - gi\|187770894\|gb\|EDU34738.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC41... gi\|168769591, gi... - gi\|189361469\|gb\|EDU79888.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC44... gi\|189373954, gi... - gi\|189373954\|gb\|EDU92370.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC86... SECG_ECOL6 - Protein-export membrane protein secG OS=Escherichia coli O6 GN=secG PE=3 SV=1 gi\|189001111, gi... - gi\|189001111\|gb\|EDU70097.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC40... gi\|170082710, gi... - gi\|170082710\|ref\|YP_001732030.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12... gi\|189379688, gi... - gi\|189379688\|gb\|EDU98104.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC50... SECG_ECOL6 - Protein-export membrane protein SecG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|188016351, gi... - gi\|188016351\|gb\|EDU54473.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC41... gi\|162138366 - gi\|162138366\|ref\|YP_542582.2\| preprotein translocase subunit SecG [Escherichia coli UTI89] gi\|218555745, gi... - gi\|218555745\|ref\|YP_002388658.1\| preprotein translocase subunit SecG [Escherichia coli IAI1], gi\|218... gi\|218550458, gi... - gi\|218550458\|ref\|YP_002384249.1\| preprotein translocase subunit SecG [Escherichia fergusonii ATCC 35... gi\|74313712, gi\|... - gi\|74313712\|ref\|YP_312131.1\| preprotein translocase subunit SecG [Shigella sonnei Ss046], gi\|7385718... gi\|218691465, gi... - gi\|218691465\|ref\|YP_002399677.1\| preprotein translocase subunit SecG [Escherichia coli ED1a], gi\|218... gi\|89109938, gi\|... - gi\|89109938\|ref\|AP_003718.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12 sub... gi\|218367014, gi... - gi\|218560245\|ref\|YP_002393158.1\| preprotein translocase subunit SecG [Escherichia coli S88], gi\|2183... gi\|218701944, gi... - gi\|218701944\|ref\|YP_002409573.1\| preprotein translocase subunit SecG [Escherichia coli IAI39], gi\|21... gi\|218353612, gi... - gi\|218696880\|ref\|YP_002404547.1\| preprotein translocase subunit SecG [Escherichia coli 55989], gi\|21... gi\|218706795, gi... - gi\|218706795\|ref\|YP_002414314.1\| preprotein translocase subunit SecG [Escherichia coli UMN026], gi\|2... SECG_ECOLI - Protein-export membrane protein secG (Preprotein translocase band 1 subunit) (P12) - Escherichia col... gi\|195938393 - gi\|195938393\|ref\|ZP_03083775.1\| preprotein translocase subunit SecG [Escherichia coli O157:H7 str. E... gi\|194433719, gi... - gi\|194433719\|ref\|ZP_03065994.1\| preprotein translocase, SecG subunit [Shigella dysenteriae 1012], gi... gi\|208814133, gi... - gi\|208814133\|ref\|ZP_03255462.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|208726408, gi... - gi\|208806607\|ref\|ZP_03248944.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|190907529, gi... - gi\|75240802\|ref\|ZP_00724700.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli F11], ... gi\|209162168, gi... - gi\|209400768\|ref\|YP_002272645.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str.... gi\|75260103, gi\|... - gi\|75260103\|ref\|ZP_00731381.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli E22], ... gi\|208818987, gi... - gi\|208818987\|ref\|ZP_03259307.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|187733049, gi... - gi\|75176224\|ref\|ZP_00696376.1\| COG1314: Preprotein translocase subunit SecG [Shigella boydii BS512],... gi\|217326643, gi... - gi\|217326643\|ref\|ZP_03442726.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|75208499, gi\|... - gi\|75208499\|ref\|ZP_00708819.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli B171],... gi\|215488491, gi... - gi\|215488491\|ref\|YP_002330922.1\| preprotein translocase subunit SecG [Escherichia coli O127:H6 str. ... gi\|115514593, gi... - gi\|117625469\|ref\|YP_858792.1\| preprotein translocase subunit SecG [Escherichia coli APEC O1], gi\|115... EG12095 - preprotein translocase membrane subunit / SecYEG inner membrane translocon secA-interacting subunit;... gi\|227835292, gi... - gi\|227887896\|ref\|ZP_04005701.1\| Sec family type II general secretory pathway preprotein translocase ... gi\|15833308, gi\|... - gi\|15833308\|ref\|NP_312081.1\| preprotein translocase subunit SecG [Escherichia coli O157:H7 str. Saka... gi\|238902277, gi... - gi\|238902277\|ref\|YP_002928073.1\| preprotein translocase membrane subunit [Escherichia coli BW2952], ... gi\|110643415, gi... - gi\|110643415\|ref\|YP_671145.1\| preprotein translocase subunit SecG [Escherichia coli 536], gi\|1103450... gi\|254795124, gi... - gi\|254795124\|ref\|YP_003079961.1\| preprotein translocase membrane subunit [Escherichia coli O157:H7 s... SECG_ECO57 - Protein-export membrane protein SecG OS=Escherichia coli O157:H7 GN=secG PE=3 SV=1 EG12095 - preprotein translocase membrane subunit / SecYEG inner membrane translocon secA-interacting subunit;...	1.0E-28	[1..109]	[1..109]
gi\|194422227, gi... - gi\|83585814\|ref\|ZP_00924455.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli 101-1]... gi\|170018575, gi... - gi\|170018575\|ref\|YP_001723529.1\| preprotein translocase subunit SecG [Escherichia coli ATCC 8739], g... gi\|188492818, gi... - gi\|75513388\|ref\|ZP_00735812.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli 53638]... gi\|193067481, gi... - gi\|75239258\|ref\|ZP_00723229.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli E11001... gi\|124502023, gi... - gi\|124525919\|ref\|ZP_01697924.1\| preprotein translocase, SecG subunit [Escherichia coli B], gi\|124502... gi\|253979174, gi... - gi\|254289867\|ref\|YP_003055615.1\| protein-export membrane protein [Escherichia coli BL21(DE3)], gi\|25... gi\|190901916, gi... - gi\|75228768\|ref\|ZP_00715377.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli B7A], ... gi\|242378718, gi... - gi\|251786445\|ref\|YP_003000749.1\| hypothetical protein B21_02991 [Escherichia coli BL21], gi\|24237871... gi\|157162658, gi... - gi\|75197124\|ref\|ZP_00707194.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli HS], g... gi\|209920650, gi... - gi\|209920650\|ref\|YP_002294734.1\| preprotein translocase subunit SecG [Escherichia coli SE11], gi\|209... gi\|157155933, gi... - gi\|75187981\|ref\|ZP_00701248.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli E24377... gi\|253975018, gi... - gi\|254163117\|ref\|YP_003046225.1\| protein-export membrane protein [Escherichia coli B str. REL606], g...	1.0E-28	[1..109]	[1..109]
gi\|81246998, gi\|... - gi\|82545587\|ref\|YP_409534.1\| preprotein translocase subunit SecG [Shigella boydii Sb227], gi\|8124699... gi\|24053646, gi\|... - gi\|24114464\|ref\|NP_708974.1\| preprotein translocase subunit SecG [Shigella flexneri 2a str. 301], gi... gi\|30042772, gi\|... - gi\|30064513\|ref\|NP_838684.1\| preprotein translocase subunit SecG [Shigella flexneri 2a str. 2457T], ... gi\|162139328 - gi\|162139328\|ref\|YP_690561.2\| preprotein translocase subunit SecG [Shigella flexneri 5 str. 8401]	2.0E-28	[1..109]	[1..109]
gi\|82778489, gi\|... - gi\|82778489\|ref\|YP_404838.1\| preprotein translocase subunit SecG [Shigella dysenteriae Sd197], gi\|81...	2.0E-28	[1..109]	[1..109]
gi\|25306329 - gi\|25306329\|pir\|\|A85981 protein export membrane protein [imported] - Escherichia coli (strain O157:H... gi\|12517787, gi\|... - gi\|15803715\|ref\|NP_289749.1\| preprotein translocase subunit SecG [Escherichia coli O157:H7 EDL933], ...	3.0E-28	[1..109]	[1..109]
gi\|85058352, gi\|... - gi\|85058352\|ref\|YP_454054.1\| preprotein translocase subunit SecG [Sodalis glossinidius str. 'morsita...	7.0E-28	[1..110]	[1..110]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEALLVVFL IVAIGLVGLI MLQQGKGADM GASFGAGASA TLFGSSGSGN FMTRMTAVLA  60
   61 TLFFIISLVL GNINSNKTNK GSEWENLSAP AKTEQTQPAA PAQPTSDIPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2akhX
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits