YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213647265
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213647265.

Description	E-value	Query Range	Subject Range
YAAI_SALTY - UPF0412 protein yaaI OS=Salmonella typhimurium GN=yaaI PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yaaI] [protein=hypothetical protein] [protein_id=YP_005235644.1] [location=complement(10841..1... YAAI_SALTY - UPF0412 protein YaaI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yaaI PE=3 SV... YAAI_SALTY - UPF0412 protein yaaI OS=Salmonella typhimurium GN=yaaI PE=3 SV=1	4.0E-62	[1..134]	[1..134]
YAAI_SALCH - UPF0412 protein yaaI OS=Salmonella choleraesuis GN=yaaI PE=3 SV=1 YAAI_SALNS - UPF0412 protein YaaI OS=Salmonella newport (strain SL254) GN=yaaI PE=3 SV=1 gi\|168464465, gi... - gi\|195632822\|gb\|EDX51276.1\| protein YaaI [Salmonella enterica subsp. enterica serovar Newport str. S... YAAI_SALCH - UPF0412 protein yaaI OS=Salmonella choleraesuis GN=yaaI PE=3 SV=1 YAAI_SALCH - UPF0412 protein YaaI OS=Salmonella choleraesuis (strain SC-B67) GN=yaaI PE=3 SV=1	3.0E-61	[1..134]	[1..134]
gi\|24111462, gi\|... - gi\|24111462\|ref\|NP_705972.1\| hypothetical protein SF0013 [Shigella flexneri 2a str. 301], gi\|2405021... YAAI_SHIF8 - UPF0412 protein YaaI OS=Shigella flexneri serotype 5b (strain 8401) GN=yaaI PE=3 SV=1 gi\|83585320, gi\|... - gi\|83585320\|ref\|ZP_00923968.1\| hypothetical protein Ecol1_01003509 [Escherichia coli 101-1], gi\|1944... gi\|30061583, gi\|... - gi\|30061583\|ref\|NP_835754.1\| hypothetical protein S0013 [Shigella flexneri 2a str. 2457T], gi\|300398... YAAI_SHISS - UPF0412 protein YaaI OS=Shigella sonnei (strain Ss046) GN=yaaI PE=3 SV=1 YAAI_ECO8A - UPF0412 protein YaaI OS=Escherichia coli O8 (strain IAI1) GN=yaaI PE=3 SV=1 gi\|209747204, gi... - gi\|209747210\|gb\|ACI71912.1\| hypothetical protein ECs0013 [Escherichia coli], gi\|209747204\|gb\|ACI7190... gi\|253972035, gi... - gi\|254160134\|ref\|YP_003043242.1\| hypothetical protein ECB_00013 [Escherichia coli B str. REL606], gi... gi\|253774956, gi... - gi\|254286938\|ref\|YP_003052686.1\| hypothetical protein ECD_00013 [Escherichia coli BL21(DE3)], gi\|253... gi\|251783577, gi... - gi\|251783577\|ref\|YP_002997881.1\| hypothetical protein B21_00013 [Escherichia coli BL21], gi\|24237585... YAAI_SHIFL - UPF0412 protein YaaI OS=Shigella flexneri GN=yaaI PE=3 SV=1 YAAI_SHIDS - UPF0412 protein YaaI OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yaaI PE=3 SV=2	3.0E-60	[1..134]	[1..134]
YAAI_ECO55 - UPF0412 protein YaaI OS=Escherichia coli (strain 55989 / EAEC) GN=yaaI PE=3 SV=1 gi\|124530381, gi... - gi\|124530381\|ref\|ZP_01701067.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499272\|gb... gi\|188493300, gi... - gi\|75515604\|ref\|ZP_00737761.1\| hypothetical protein Ecol5_01000709 [Escherichia coli 53638], gi\|1884... gi\|194417584, gi... - gi\|194434147\|ref\|ZP_03066415.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|75256325, gi\|... - gi\|75256325\|ref\|ZP_00727997.1\| hypothetical protein EcolE2_01003763 [Escherichia coli E22], gi\|19306... YAAI_ECOLC - UPF0412 protein YaaI OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yaaI PE=3 SV=1 YAAI_ECOSE - UPF0412 protein YaaI OS=Escherichia coli (strain SE11) GN=yaaI PE=3 SV=1 gi\|75234576, gi\|... - gi\|75234576\|ref\|ZP_00718917.1\| hypothetical protein EcolE1_01003575 [Escherichia coli E110019], gi\|1... gi\|75229474, gi\|... - gi\|75229474\|ref\|ZP_00716024.1\| hypothetical protein EcolB7_01002336 [Escherichia coli B7A], gi\|19116... YAAI_ECOHS - UPF0412 protein YaaI OS=Escherichia coli O9:H4 (strain HS) GN=yaaI PE=3 SV=1 YAAI_ECO24 - UPF0412 protein YaaI OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yaaI PE=3 SV=1	4.0E-60	[1..134]	[1..134]
EG11513 - UPF0412 family protein / UPF0412 family predicted periplasmic protein, function unknown YAAI_ECOBW - UPF0412 protein YaaI OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yaaI PE=3 SV=1 gi\|89106897, gi\|... - gi\|89106897\|ref\|AP_000677.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YAAI_ECOLI - UPF0412 protein yaaI precursor - Escherichia coli YAAI_ECODH - UPF0412 protein YaaI OS=Escherichia coli (strain K12 / DH10B) GN=yaaI PE=3 SV=1 EG11513 - UPF0412 family protein / UPF0412 family predicted periplasmic protein, function unknown	1.0E-59	[1..134]	[1..134]
gi\|194412761, gi... - gi\|75209617\|ref\|ZP_00709835.1\| hypothetical protein EcolB_01003254 [Escherichia coli B171], gi\|19442...	1.0E-59	[1..134]	[1..134]
gi\|168762772, gi... - gi\|189366992\|gb\|EDU85408.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168756837, gi... - gi\|189356050\|gb\|EDU74469.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188014899, gi... - gi\|188014899\|gb\|EDU53021.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168785062, gi... - gi\|189374965\|gb\|EDU93381.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189000700, gi... - gi\|189000700\|gb\|EDU69686.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|13359469, gi\|... - gi\|15829267\|ref\|NP_308040.1\| hypothetical protein ECs0013 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168776603, gi... - gi\|187768027\|gb\|EDU31871.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168766701, gi... - gi\|189364014\|gb\|EDU82433.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|25332827, gi\|... - pir\|\|E85481 hypothetical protein yaaI [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15799693, gi\|... - gi\|15799693\|ref\|NP_285705.1\| hypothetical protein Z0013 [Escherichia coli O157:H7 EDL933], gi\|125126... YAAI_ECO57 - UPF0412 protein YaaI OS=Escherichia coli O157:H7 GN=yaaI PE=3 SV=1 gi\|254590548, gi... - gi\|254791148\|ref\|YP_003075985.1\| hypothetical protein ECSP_0012 [Escherichia coli O157:H7 str. TW143... gi\|208814134, gi... - gi\|208814134\|ref\|ZP_03255463.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208729468, gi... - gi\|208809667\|ref\|ZP_03252004.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937685 - gi\|195937685\|ref\|ZP_03083067.1\| hypothetical protein EscherichcoliO157_14757 [Escherichia coli O157:... gi\|168797992, gi... - gi\|189379435\|gb\|EDU97851.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|217320922, gi... - gi\|217324701\|ref\|ZP_03440785.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YAAI_ECO5E - UPF0412 protein YaaI OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yaaI PE=3 SV=1 gi\|208738698, gi... - gi\|208818575\|ref\|ZP_03258895.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042...	2.0E-59	[1..134]	[1..134]
gi\|191173132, gi... - gi\|75239523\|ref\|ZP_00723493.1\| hypothetical protein EcolF_01003028 [Escherichia coli F11], gi\|191173... YAAI_ECOL5 - UPF0412 protein YaaI OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yaaI PE=3 SV=1	2.0E-58	[1..134]	[1..134]
YAAI_ECOL6 - UPF0412 protein YaaI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yaaI PE=3 SV=... YAAI_ECOK1 - UPF0412 protein YaaI OS=Escherichia coli O1:K1 / APEC GN=yaaI PE=3 SV=1 YAAI_ECOUT - UPF0412 protein YaaI OS=Escherichia coli (strain UTI89 / UPEC) GN=yaaI PE=3 SV=1 gi\|226902064, gi... - gi\|237704152\|ref\|ZP_04534633.1\| yaaI [Escherichia sp. 3_2_53FAA], gi\|226902064\|gb\|EEH88323.1\| yaaI [... gi\|227885093, gi... - gi\|227885093\|ref\|ZP_04002898.1\| protein YaaI [Escherichia coli 83972], gi\|227837922\|gb\|EEJ48388.1\| p... YAAI_ECO45 - UPF0412 protein YaaI OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yaaI PE=3 SV=1 YAAI_ECOL6 - UPF0412 protein yaaI OS=Escherichia coli O6 GN=yaaI PE=3 SV=1 YAAI_ECO81 - UPF0412 protein YaaI OS=Escherichia coli O81 (strain ED1a) GN=yaaI PE=3 SV=1	1.0E-57	[1..134]	[1..134]
gi\|82775394, gi\|... - gi\|82775394\|ref\|YP_401740.1\| hypothetical protein SDY_0012 [Shigella dysenteriae Sd197], gi\|81239542...	4.0E-55	[16..134]	[1..119]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVLTISVG LLFGLALSSV AHANDHKILG VIAMPRNETN DLALKIPVCR IVKRIQLTAD  60
   61 HGDIELSGAS VYFKTARSAS QSLNVPSSIK EGQTTGWINI NSDNDNKRCV SKITFSGHTV 120
  121 NSSDMARLKV IGDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits