YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221140281
Organism:	Staphylococcus aureus subsp. aureus str. JKD6009
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221140281.

Description	E-value	Query Range	Subject Range
gi\|228825463, gi... - gi\|228934295\|ref\|ZP_04097134.1\| Nitroreductase [Bacillus thuringiensis serovar andalousiensis BGSC 4... gi\|196032437, gi... - gi\|196032437\|ref\|ZP_03099851.1\| nitroreductase family protein [Bacillus cereus W], gi\|195995188\|gb\|E... gi\|49480049, gi\|... - gi\|49480049\|ref\|YP_037122.1\| NAD(P)H nitroreductase [Bacillus thuringiensis serovar konkukian str. 9...	168.0	[0..4]	[207..1]
gi\|29896692, gi\|... - gi\|30021139\|ref\|NP_832770.1\| NAD(P)H nitroreductase [Bacillus cereus ATCC 14579], gi\|29896692\|gb\|AAP... gi\|228637878, gi... - gi\|229145632\|ref\|ZP_04274015.1\| Nitroreductase [Bacillus cereus BDRD-ST24], gi\|228637878\|gb\|EEK94325... gi\|228655222, gi... - gi\|229128363\|ref\|ZP_04257344.1\| Nitroreductase [Bacillus cereus BDRD-Cer4], gi\|228655222\|gb\|EEL11079... gi\|228672973, gi... - gi\|229110489\|ref\|ZP_04240059.1\| Nitroreductase [Bacillus cereus Rock1-15], gi\|228672973\|gb\|EEL28247....	168.0	[0..4]	[207..1]
gi\|52142481, gi\|... - gi\|52142481\|ref\|YP_084348.1\| NAD(P)H nitroreductase [Bacillus cereus E33L], gi\|51975950\|gb\|AAU17500....	168.0	[0..4]	[207..1]
gi\|229133906, gi... - gi\|229133906\|ref\|ZP_04262729.1\| Nitroreductase [Bacillus cereus BDRD-ST196], gi\|228649607\|gb\|EEL0561... gi\|163940766, gi... - gi\|89207146\|ref\|ZP_01185693.1\| Nitroreductase [Bacillus weihenstephanensis KBAB4], gi\|89154931\|gb\|EA...	168.0	[0..4]	[207..1]
gi\|42782131, gi\|... - gi\|42782131\|ref\|NP_979378.1\| nitroreductase family protein [Bacillus cereus ATCC 10987], gi\|42738055...	167.0	[0..4]	[207..1]
gi\|47568619, gi\|... - gi\|47568619\|ref\|ZP_00239317.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47554715\|gb...	165.0	[0..4]	[207..1]
gi\|148268486, gi... - gi\|90586915\|ref\|ZP_01242600.1\| Nitroreductase [Staphylococcus aureus subsp. aureus JH9], gi\|90429492... gi\|15927608, gi\|... - gi\|15927608\|ref\|NP_375141.1\| hypothetical protein SA1840 [Staphylococcus aureus subsp. aureus N315],... gi\|156722484, gi... - gi\|156980349\|ref\|YP_001442608.1\| hypothetical protein SAHV_2018 [Staphylococcus aureus subsp. aureus... gi\|25335018 - pir\|\|G89994 conserved hypothetical protein SA1840 [imported] - Staphylococcus aureus (strain N315) gi\|15925023, gi\|... - gi\|15925023\|ref\|NP_372557.1\| hypothetical protein SAV2033 [Staphylococcus aureus subsp. aureus Mu50]... gi\|150394549, gi... - gi\|90584497\|ref\|ZP_01240221.1\| Nitroreductase [Staphylococcus aureus subsp. aureus JH1], gi\|90426448... gi\|253315015 - gi\|253315015\|ref\|ZP_04838228.1\| hypothetical protein SauraC_02342 [Staphylococcus aureus subsp. aure... gi\|255006822 - gi\|255006822\|ref\|ZP_05145423.2\| hypothetical protein SauraM_10150 [Staphylococcus aureus subsp. aure...	163.0	[0..1]	[208..1]

Back

Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFKKDKKA MTFDNAMEER RSIYNLKDSI SISDDELESM IAHAVKHVPS SFNSQSTRIV  60
   61 LLLNDNNNKF WDNTKAILKE VMGENRDFEP TEQKIDNFKH SYGTILFYED QDVVSGLQEQ 120
  121 MPNYYDNFAI WSTQTNAMHQ FAIWTALATK GIGASLQHYN PLVDEMTSNE FNIPKSWKLI 180
  181 AQMPFGDIRE AAGEKTFNPV EDRFVIKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1ywqA
Description:	Crystal structure of a nitroreductase family protein from Bacillus cereus ATCC 14579
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits