YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213586696
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213586696.

Description	E-value	Query Range	Subject Range
gi\|62126897, gi\|... - gi\|62179264\|ref\|YP_215681.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enterica s...	0.0	[1..512]	[18..529]
LNT_SALTY - Apolipoprotein N-acyltransferase OS=Salmonella typhimurium GN=lnt PE=3 SV=2 LNT_SALTY - Apolipoprotein N-acyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|206707934, gi... - gi\|207856131\|ref\|YP_002242782.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteri... gi\|205351951, gi... - gi\|205351951\|ref\|YP_002225752.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteri... LNT_SALTY - Apolipoprotein N-acyltransferase OS=Salmonella typhimurium GN=lnt PE=3 SV=2 lcl\|NC_016856.1_... - [gene=lnt] [protein=apolipoprotein N-acyltransferase] [protein_id=YP_005236382.1] [location=compleme...	0.0	[1..512]	[1..512]
gi\|197094606, gi... - gi\|197363129\|ref\|YP_002142766.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteri... gi\|56128462, gi\|... - gi\|56414205\|ref\|YP_151280.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enterica s...	0.0	[1..512]	[1..512]
gi\|218364357, gi... - gi\|218557588\|ref\|YP_002390501.1\| apolipoprotein N-acyltransferase [Escherichia coli S88], gi\|2183643... gi\|91209700, gi\|... - gi\|91209700\|ref\|YP_539686.1\| apolipoprotein N-acyltransferase [Escherichia coli UTI89], gi\|91071274\|... gi\|226898584, gi... - gi\|237707374\|ref\|ZP_04537855.1\| apolipoprotein N-acyltransferase [Escherichia sp. 3_2_53FAA], gi\|226... gi\|115511990, gi... - gi\|117622866\|ref\|YP_851779.1\| apolipoprotein N-acyltransferase [Escherichia coli APEC O1], gi\|115511...	0.0	[1..512]	[1..512]
gi\|89107526, gi\|... - gi\|89107526\|ref\|AP_001306.1\| apolipoprotein N-acyltransferase [Escherichia coli str. K-12 substr. W3... EG10168 - apolipoprotein N-acyltransferase / Apolipoprotein N-acyltransferase; copper sensitivity LNT_ECOLI - Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP N-acyltransferase) (Copper homeostasis protein cu... gi\|169888172, gi... - gi\|170080337\|ref\|YP_001729657.1\| apolipoprotein N-acyltransferase [Escherichia coli str. K-12 substr... EG10168 - apolipoprotein N-acyltransferase / Apolipoprotein N-acyltransferase; copper sensitivity gi\|238899934, gi... - gi\|238899934\|ref\|YP_002925730.1\| apolipoprotein N-acyltransferase [Escherichia coli BW2952], gi\|2388...	0.0	[1..512]	[1..512]
gi\|82775934, gi\|... - gi\|82775934\|ref\|YP_402281.1\| apolipoprotein N-acyltransferase [Shigella dysenteriae Sd197], gi\|81240...	0.0	[1..512]	[1..512]
gi\|208823016, gi... - gi\|208823016\|ref\|ZP_03263334.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC40... gi\|209160090, gi... - gi\|209398690\|ref\|YP_002269292.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4... gi\|217324977, gi... - gi\|217324977\|ref\|ZP_03441061.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. TW14... gi\|12513563, gi\|... - gi\|15800370\|ref\|NP_286382.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 EDL933], gi\|... gi\|189375564, gi... - gi\|189375564\|gb\|EDU93980.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC508], ... LNT_ECO57 - Apolipoprotein N-acyltransferase OS=Escherichia coli O157:H7 GN=lnt PE=3 SV=1 gi\|25320781, gi\|... - pir\|\|G90715 apolipoprotein N-acyltransferase [imported] - Escherichia coli (strain O157:H7, substrai... gi\|195939394 - gi\|195939394\|ref\|ZP_03084776.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC40... gi\|208805668, gi... - gi\|208805668\|ref\|ZP_03248005.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC42... gi\|254791820, gi... - gi\|254791820\|ref\|YP_003076657.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. TW1... gi\|208814885, gi... - gi\|208814885\|ref\|ZP_03256064.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC40... gi\|189363583, gi... - gi\|189363583\|gb\|EDU82002.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4486],... gi\|187767182, gi... - gi\|187767182\|gb\|EDU31026.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4196],... gi\|189003122, gi... - gi\|189003122\|gb\|EDU72108.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4076],... gi\|168786506, gi... - gi\|189373590\|gb\|EDU92006.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC869], ... gi\|168752226, gi... - gi\|188013888\|gb\|EDU52010.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4113],... gi\|189354864, gi... - gi\|189354864\|gb\|EDU73283.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4401],... gi\|168764667, gi... - gi\|189365379\|gb\|EDU83795.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4501],... gi\|13360153, gi\|... - gi\|15829949\|ref\|NP_308722.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. Sakai],...	0.0	[1..512]	[1..512]
gi\|124529692, gi... - gi\|124529692\|ref\|ZP_01700599.1\| apolipoprotein N-acyltransferase [Escherichia coli B], gi\|124499695\|... gi\|157160145, gi... - gi\|75194834\|ref\|ZP_00704904.1\| COG0815: Apolipoprotein N-acyltransferase [Escherichia coli HS], gi\|1... gi\|170020986, gi... - gi\|170020986\|ref\|YP_001725940.1\| apolipoprotein N-acyltransferase [Escherichia coli ATCC 8739], gi\|1...	0.0	[1..512]	[1..512]
gi\|110342471, gi... - gi\|110640879\|ref\|YP_668607.1\| apolipoprotein N-acyltransferase [Escherichia coli 536], gi\|110342471\|... gi\|75237590, gi\|... - gi\|75237590\|ref\|ZP_00721621.1\| COG0815: Apolipoprotein N-acyltransferase [Escherichia coli F11], gi\|...	0.0	[1..512]	[1..512]
gi\|190901283, gi... - gi\|75228114\|ref\|ZP_00714785.1\| COG0815: Apolipoprotein N-acyltransferase [Escherichia coli B7A], gi\|...	0.0	[1..512]	[1..512]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFASLIERQ RIRLLLALLF GACGTLAFSP YDVWPAAIVS LIGLQALTFN RRPLQSAAIG  60
   61 YCWGLGLFGS GINWVYVSIA QFGGMPGPVN VFLVVLLAAY LSLYTGLFAG ILSRLWPKTN 120
  121 WLRVAIAAPA IWQITEFLRG WVLTGFPWLQ FGYSQVDGPL KGLAPVMGVE AINFLLMMVS 180
  181 GLLALALATR NWRPLAVAVI LFALPFPLRY IQWFTLE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTKATQVSLV QGDIPQSLKW DENQLLNTLN IYLNETRPEL GKSQIIIWPE SAIPDLEINQ  60
   61 QPFLRSLDEM LREKNSTLIT GIVDARLNKQ NRYDTYNTII TLGKDNPYSY DSPNRYNKNH 120
  121 LVPFGEFVPL ESILRPLAPF FDLPMSSFSR GPYIQPQLHA HDYKLTAAIC YEIILGEQVR 180
  181 DNFRPDTDYL LTISNDAWFG KSIGPWQHFQ MARMRSLELA RPLLRSTNNG ITAVIGPQGE 240
  241 IQAMIPQFTR QVLTTKVTPT TGLTPYARTG DWTVWLITVL FGFGALVMSL RQRRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
binding	0.550662194183032	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.472813950465394	bayes_pls_golite062009
protein binding	0.360416829919237	bayes_pls_golite062009
hydrolase activity	0.259754203148441	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: