YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224399521, gi...
Organism:	Marinitoga piezophila KA3
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224399521, gi....

Description	E-value	Query Range	Subject Range
gi\|194467497, gi... - gi\|92090286\|ref\|ZP_01275165.1\| ABC transporter related [Lactobacillus reuteri 100-23], gi\|91802944\|g...	320.0	[0..5]	[250..7]
gi\|148530372, gi... - gi\|89091775\|ref\|ZP_01164743.1\| ATPas [Lactobacillus reuteri JCM 1112], gi\|89078406\|gb\|EAR57769.1\| AT... gi\|227070503, gi... - gi\|227364410\|ref\|ZP_03848500.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Lacto... gi\|227531705, gi... - gi\|227531705\|ref\|ZP_03961754.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Lacto...	320.0	[0..5]	[250..7]
PSTB_CARHZ - Phosphate import ATP-binding protein PstB OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 ...	320.0	[0..5]	[251..7]
PSTB_METJA - Phosphate import ATP-binding protein PstB OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ... PSTB_METJA - Phosphate import ATP-binding protein pstB OS=Methanocaldococcus jannaschii GN=pstB PE=3 SV=1	318.0	[0..1]	[251..1]
PSTB_METBU - Phosphate import ATP-binding protein PstB OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 10763...	317.0	[0..5]	[251..10]
PSTB_CHRVO - Phosphate import ATP-binding protein PstB OS=Chromobacterium violaceum GN=pstB PE=3 SV=1 PSTB_CHRVO - Phosphate import ATP-binding protein PstB OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 3019...	316.0	[0..1]	[251..1]
gi\|55738561 - gb\|AAV62202.1\| amino acid (glutamine) ABC transporter ATP-binding protein [Streptococcus thermophilu... gi\|55738561, gi\|... - gi\|55822576\|ref\|YP_141017.1\| amino acid (glutamine) ABC transporter ATP-binding protein [Streptococc...	316.0	[0..2]	[250..3]
gi\|55736670, gi\|... - gi\|55820685\|ref\|YP_139127.1\| polar amino acid ABC uptake transporter ATP-binding protein [Streptococ... gi\|55736670 - gb\|AAV60312.1\| polar amino acid ABC uptake transporter ATP-binding protein [Streptococcus thermophil... gi\|116627491, gi... - gi\|62528355\|ref\|ZP_00389609.1\| COG1126: ABC-type polar amino acid transport system, ATPase component...	316.0	[0..2]	[250..3]
gi\|82744961, gi\|... - gi\|82744961\|ref\|ZP_00907475.1\| ATPas [Clostridium beijerincki NCIMB 8052], gi\|82727146\|gb\|EAP61881.1...	315.0	[0..4]	[250..1]
PSTB2_CALS4 - Phosphate import ATP-binding protein PstB 2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (s... PSTB2_THETN, PSB... - Phosphate import ATP-binding protein pstB 2 OS=Thermoanaerobacter tengcongensis GN=pstB2 PE=3 SV=1, ...	314.0	[0..1]	[251..1]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPIIEIENF SAYYGEKIAV KNVTMKIFKN QITAIIGPSG CGKTTLLRSI NRMNDHLPGF  60
   61 RVEGKIYFKG QDIYDPQLDV TEYRKRVGMV FQKPTPFPMS IYDNVAFGPR IHGVKSKHIL 120
  121 DRIVEESLKK AALWDEVKSE LNKSGTRLSG GQQQRLCIAR ALAVEPEVIL LDEPTSALDP 180
  181 IATQRIEKLL EELSENYTIV IVTHNIGQAI RIADYIAFMY RGELIEYGPT REIVERPKNR 240
  241 LTEEYLTGKI G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits