YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_ECODH
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_ECODH.

Description	E-value	Query Range	Subject Range
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	194.0	[0..12]	[197..50]
gi\|62181253, gi\|... - gi\|62181253\|ref\|YP_217670.1\| molecular chaparone; heat shock protein [Salmonella enterica subsp. ent...	192.0	[0..1]	[196..65]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	192.0	[0..1]	[196..1]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	189.0	[0..1]	[196..1]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	189.0	[0..1]	[195..93]
gi\|75227656 - gi\|75227656\|ref\|ZP_00714397.1\| COG0576: Molecular chaperone GrpE (heat shock protein) [Escherichia c... gi\|192955406, gi... - gi\|75233817\|ref\|ZP_00718294.1\| COG0576: Molecular chaperone GrpE (heat shock protein) [Escherichia c... GRPE_ECOHS - Protein GrpE OS=Escherichia coli O9:H4 (strain HS) GN=grpE PE=3 SV=1 GRPE_SHISS - Protein GrpE OS=Shigella sonnei (strain Ss046) GN=grpE PE=3 SV=1 GRPE_SHIDS - Protein GrpE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=grpE PE=3 SV=1 gi\|191171373, gi... - gi\|75241599\|ref\|ZP_00725436.1\| COG0576: Molecular chaperone GrpE (heat shock protein) [Escherichia c... gi\|75513219, gi\|... - gi\|75513219\|ref\|ZP_00735661.1\| COG0576: Molecular chaperone GrpE (heat shock protein) [Escherichia c... gi\|209762508, gi... - pir\|\|H85907 heat shock protein GrpE [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|13362947, gi\|... - gi\|15832730\|ref\|NP_311503.1\| heat shock protein GrpE [Escherichia coli O157:H7 str. Sakai], gi\|13362... GRPE_ECOLC - Protein GrpE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=grpE PE=3 SV=1 GRPE_ECOL5 - Protein GrpE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=grpE PE=3 SV=1 GRPE_SHIB3 - Protein GrpE OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=grpE PE=3 SV=1 GRPE_ECOL6 - Protein grpE OS=Escherichia coli O6 GN=grpE PE=3 SV=1 gi\|189405288, gi... - gi\|189405288\|ref\|ZP_03007748.1\| co-chaperone GrpE [Escherichia coli O157:H7 str. EC869], gi\|18937086... GRPE_ECO57 - Protein GrpE OS=Escherichia coli O157:H7 GN=grpE PE=3 SV=1 gi\|189404136, gi... - gi\|189404136\|ref\|ZP_03007340.1\| co-chaperone GrpE [Escherichia coli O157:H7 str. EC4501], gi\|1893672... gi\|227834819, gi... - gi\|227888179\|ref\|ZP_04005984.1\| co-chaperone GrpE [Escherichia coli 83972], gi\|227834819\|gb\|EEJ45285... gi\|251785935, gi... - gi\|251785935\|ref\|YP_003000239.1\| hypothetical protein B21_02466 [Escherichia coli BL21], gi\|24237820... gi\|253978651, gi... - gi\|254289344\|ref\|YP_003055092.1\| heat shock protein [Escherichia coli BL21(DE3)], gi\|253978651\|gb\|AC... gi\|254037690, gi... - gi\|254037690\|ref\|ZP_04871748.1\| grpE [Escherichia sp. 1_1_43], gi\|226839314\|gb\|EEH71335.1\| grpE [Esc... gi\|253974484, gi... - gi\|254162583\|ref\|YP_003045691.1\| heat shock protein [Escherichia coli B str. REL606], gi\|253974484\|g... gi\|124528012, gi... - gi\|124528012\|ref\|ZP_01699365.1\| GrpE protein [Escherichia coli B], gi\|124500904\|gb\|EAY48372.1\| GrpE ... GRPE_ECOL6 - Protein GrpE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=grpE PE=3 SV=1 gi\|24113951, gi\|... - gi\|24113951\|ref\|NP_708461.1\| heat shock protein GrpE [Shigella flexneri 2a str. 301], gi\|24053058\|gb... gi\|12517038, gi\|... - gi\|15803134\|ref\|NP_289166.1\| heat shock protein GrpE [Escherichia coli O157:H7 EDL933], gi\|12517038\|... gi\|30064012, gi\|... - gi\|30064012\|ref\|NP_838183.1\| heat shock protein GrpE [Shigella flexneri 2a str. 2457T], gi\|30042268\|... sp\|B7UH62\|GRPE_ECO27 - Protein grpE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=grpE PE=3 SV=1 GRPE_SHIFL - Protein GrpE OS=Shigella flexneri GN=grpE PE=3 SV=1 GRPE_ECO27 - Protein GrpE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=grpE PE=3 SV=1 GRPE_ECOSE - Protein GrpE OS=Escherichia coli (strain SE11) GN=grpE PE=3 SV=1 GRPE_SHIBS - Protein GrpE OS=Shigella boydii serotype 4 (strain Sb227) GN=grpE PE=3 SV=1 GRPE_ECO8A - Protein GrpE OS=Escherichia coli O8 (strain IAI1) GN=grpE PE=3 SV=1 gi\|217327690, gi... - gi\|217327690\|ref\|ZP_03443773.1\| co-chaperone GrpE [Escherichia coli O157:H7 str. TW14588], gi\|217320... GRPE_ECO7I - Protein GrpE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=grpE PE=3 SV=1 GRPE_ECO55 - Protein GrpE OS=Escherichia coli (strain 55989 / EAEC) GN=grpE PE=3 SV=1 GRPE_ECOLU - Protein GrpE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=grpE PE=3 SV=1	189.0	[0..1]	[197..1]
GRPE_SHIF8 - Protein GrpE OS=Shigella flexneri serotype 5b (strain 8401) GN=grpE PE=3 SV=1	189.0	[0..1]	[197..1]
gi\|75210855, gi\|... - gi\|75210855\|ref\|ZP_00710979.1\| COG0576: Molecular chaperone GrpE (heat shock protein) [Escherichia c... GRPE_ECO24 - Protein GrpE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=grpE PE=3 SV=1	188.0	[0..1]	[196..1]
GRPE_ECOUT - Protein GrpE OS=Escherichia coli (strain UTI89 / UPEC) GN=grpE PE=3 SV=1 GRPE_ECO45 - Protein GrpE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=grpE PE=3 SV=1 GRPE_ECO81 - Protein GrpE OS=Escherichia coli O81 (strain ED1a) GN=grpE PE=3 SV=1 gi\|237706799, gi... - gi\|237706799\|ref\|ZP_04537280.1\| grpE [Escherichia sp. 3_2_53FAA], gi\|226899839\|gb\|EEH86098.1\| grpE [...	188.0	[0..1]	[196..1]
gi\|90416141, gi\|... - gi\|90416141\|ref\|ZP_01224073.1\| heat shock protein GrpE [marine gamma proteobacterium HTCC2207], gi\|9... gi\|90416141\|ref\|... - heat shock protein GrpE [marine gamma proteobacterium HTCC2207]	188.0	[0..1]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKEQKTPE GQAPEEIIMD QHEEIEAVEP EASAEQVDPR DEKVANLEAQ LAEAQTRERD  60
   61 GILRVKAEME NLRRRTELDI EKAHKFALEK FINELLPVID SLDRALEVAD KANPDMSAMV 120
  121 EGIELTLKSM LDVVRKFGVE VIAETNVPLD PNVHQAIAMV ESDDVAPGNV LGIMQKGYTL 180
  181 NGRTIRAAMV TVAKAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits