YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197937947, gi...
Organism:	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197937947, gi....

Description	E-value	Query Range	Subject Range
gi\|71728164, gi\|... - gi\|71902072\|ref\|ZP_00684111.1\| Iron dependent repressor [Xylella fastidiosa Ann-1], gi\|71728164\|gb\|E...	2.0E-29	[1..156]	[5..164]
gi\|28198228, gi\|... - gi\|28198228\|ref\|NP_778542.1\| manganese transport regulator MntR [Xylella fastidiosa Temecula1], gi\|2...	7.0E-29	[1..156]	[1..160]
gi\|110283329, gi... - gi\|69279172\|ref\|ZP_00614086.1\| Iron dependent repressor [Mesorhizobium sp. BNC1], gi\|68190189\|gb\|EAN...	1.0E-28	[1..149]	[1..149]
gi\|11360743 - pir\|\|A82733 conserved hypothetical protein XF1013 [imported] - Xylella fastidiosa (strain 9a5c) gi\|9105951, gi\|1... - gi\|9105951\|gb\|AAF83823.1\|AE003939_2 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|158...	6.0E-28	[1..156]	[1..160]
gi\|71275636, gi\|... - gi\|71275636\|ref\|ZP_00651921.1\| Iron dependent repressor [Xylella fastidiosa Dixon], gi\|71163527\|gb\|E... gi\|71897820, gi\|... - gi\|71897820\|ref\|ZP_00680046.1\| Iron dependent repressor [Xylella fastidiosa Ann-1], gi\|71732375\|gb\|E...	8.0E-28	[1..156]	[5..164]
gi\|58426423, gi\|... - gi\|58581829\|ref\|YP_200845.1\| iron dependent repressor [Xanthomonas oryzae pv. oryzae KACC10331], gi\|...	2.0E-27	[16..155]	[42..181]
gi\|192928866, gi... - gi\|75257586\|ref\|ZP_00729083.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli E22... gi\|75512822, gi\|... - gi\|75512822\|ref\|ZP_00735314.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli 536... gi\|192957340, gi... - gi\|75236126\|ref\|ZP_00720250.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli E11... gi\|75238151, gi\|... - gi\|75238151\|ref\|ZP_00722155.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli F11... gi\|170020827, gi... - gi\|170020827\|ref\|YP_001725781.1\| manganese transport regulator MntR [Escherichia coli ATCC 8739], gi... gi\|169888311, gi... - gi\|170080476\|ref\|YP_001729796.1\| DNA-binding transcriptional regulator of mntH [Escherichia coli str... gi\|73854836, gi\|... - gi\|74311359\|ref\|YP_309778.1\| manganese transport regulator MntR [Shigella sonnei Ss046], gi\|73854836... gi\|170517361, gi... - gi\|170679643\|ref\|YP_001742921.1\| transcriptional regulator MntR [Escherichia coli SMS-3-5], gi\|17051... gi\|209918065, gi... - gi\|209918065\|ref\|YP_002292149.1\| manganese transport regulator MntR [Escherichia coli SE11], gi\|2099... gi\|83586120, gi\|... - gi\|83586120\|ref\|ZP_00924757.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli 101... gi\|75178391, gi\|... - gi\|75178391\|ref\|ZP_00698445.1\| COG1321: Mn-dependent transcriptional regulator [Shigella boydii BS51... gi\|194413763, gi... - gi\|75210589\|ref\|ZP_00710737.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli B17... gi\|75230660, gi\|... - gi\|75230660\|ref\|ZP_00717131.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli B7A... gi\|75189857, gi\|... - gi\|75189857\|ref\|ZP_00703124.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli E24... gi\|157065975, gi... - gi\|75194967\|ref\|ZP_00705037.1\| COG1321: Mn-dependent transcriptional regulator [Escherichia coli HS]... EG13322 - Mn(2+)-responsive manganese regulon transcriptional regulator / Mn(2+)-responsive manganese regulon ... gi\|215263976, gi... - gi\|215485904\|ref\|YP_002328335.1\| manganese transport regulator MntR [Escherichia coli O127:H6 str. E... gi\|218553402, gi... - gi\|218553402\|ref\|YP_002386315.1\| manganese transport regulator MntR [Escherichia coli IAI1], gi\|2183... MNTR_ECOL6 - Transcriptional regulator mntR OS=Escherichia coli O6 GN=mntR PE=3 SV=1 gi\|218557722, gi... - gi\|218557722\|ref\|YP_002390635.1\| manganese transport regulator MntR [Escherichia coli S88], gi\|21836... gi\|227838970, gi... - gi\|227884218\|ref\|ZP_04002023.1\| DNA-binding transcriptional regulator of mntH [Escherichia coli 8397... MNTR_ECOL6 - Transcriptional regulator MntR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mnt... gi\|218688601, gi... - gi\|218688601\|ref\|YP_002396813.1\| manganese transport regulator MntR [Escherichia coli ED1a], gi\|2184... gi\|226898431, gi... - gi\|237707221\|ref\|ZP_04537702.1\| transcriptional regulator MntR [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218351022, gi... - gi\|218694290\|ref\|YP_002401957.1\| manganese transport regulator MntR [Escherichia coli 55989], gi\|218... gi\|238860956, gi... - gi\|238900076\|ref\|YP_002925872.1\| DNA-binding transcriptional regulator of mntH [Escherichia coli BW2... gi\|218431332, gi... - gi\|218704235\|ref\|YP_002411754.1\| manganese transport regulator MntR [Escherichia coli UMN026], gi\|21... gi\|242376609, gi... - gi\|251784336\|ref\|YP_002998640.1\| hypothetical protein B21_00801 [Escherichia coli BL21], gi\|24237660... gi\|253325224, gi... - gi\|254287708\|ref\|YP_003053456.1\| DNA-binding transcriptional regulator of mntH [Escherichia coli BL2... gi\|253972795, gi... - gi\|254160894\|ref\|YP_003044002.1\| DNA-binding transcriptional regulator of mntH [Escherichia coli B s... gi\|89107668, gi\|... - gi\|89107668\|ref\|AP_001448.1\| transcriptional regulator of mntH [Escherichia coli str. K-12 substr. W... gi\|91209852, gi\|... - gi\|91209852\|ref\|YP_539838.1\| manganese transport regulator MntR [Escherichia coli UTI89], gi\|9107142... gi\|110641021, gi... - gi\|110641021\|ref\|YP_668749.1\| manganese transport regulator MntR [Escherichia coli 536], gi\|11034261... gi\|115512121, gi... - gi\|117622997\|ref\|YP_851910.1\| manganese transport regulator MntR [Escherichia coli APEC O1], gi\|1155... gi\|124501379, gi... - gi\|124527034\|ref\|ZP_01698871.1\| iron (metal) dependent repressor, DtxR family [Escherichia coli B], ... EG13322 - Mn(2+)-responsive manganese regulon transcriptional regulator / Mn(2+)-responsive manganese regulon ... MNTR_ECOLI - Transcriptional regulator mntR (Manganese transport regulator) - Escherichia coli	4.0E-27	[1..153]	[1..153]
gi\|81244673, gi\|... - gi\|82543262\|ref\|YP_407209.1\| manganese transport regulator MntR [Shigella boydii Sb227], gi\|81244673... gi\|30062300, gi\|... - gi\|30062300\|ref\|NP_836471.1\| manganese transport regulator MntR [Shigella flexneri 2a str. 2457T], g... gi\|24051024, gi\|... - gi\|24112184\|ref\|NP_706694.1\| manganese transport regulator MntR [Shigella flexneri 2a str. 301], gi\|... gi\|110804816, gi... - gi\|110804816\|ref\|YP_688336.1\| manganese transport regulator MntR [Shigella flexneri 5 str. 8401], gi...	1.0E-26	[1..153]	[1..153]
gi\|81240253, gi\|... - gi\|82776105\|ref\|YP_402452.1\| manganese transport regulator MntR [Shigella dysenteriae Sd197], gi\|812...	1.0E-26	[1..153]	[1..153]
gi\|189363532, gi... - gi\|189363532\|gb\|EDU81951.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4486], g... gi\|168763335, gi... - gi\|189366531\|gb\|EDU84947.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4501], g... gi\|254591413, gi... - gi\|254792013\|ref\|YP_003076850.1\| DNA-binding transcriptional regulator of mntH [Escherichia coli O15... gi\|13360353, gi\|... - gi\|15830148\|ref\|NP_308921.1\| manganese transport regulator MntR [Escherichia coli O157:H7 str. Sakai... gi\|189002690, gi... - gi\|189002690\|gb\|EDU71676.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4076], g... gi\|187768246, gi... - gi\|187768246\|gb\|EDU32090.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4196], g... gi\|189356273, gi... - gi\|189356273\|gb\|EDU74692.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4401], g... gi\|168749999, gi... - gi\|188015704\|gb\|EDU53826.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4113], g... gi\|209775740, gi... - pir\|\|A85591 probable toxin Z1039 [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|12513816, gi\|... - gi\|15800569\|ref\|NP_286581.1\| manganese transport regulator MntR [Escherichia coli O157:H7 EDL933], g... MNTR_ECO57 - Transcriptional regulator MntR OS=Escherichia coli O157:H7 GN=mntR PE=3 SV=1 gi\|208822481, gi... - gi\|208822481\|ref\|ZP_03262800.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4042... gi\|208816128, gi... - gi\|208816128\|ref\|ZP_03257307.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4045... gi\|217321666, gi... - gi\|217325445\|ref\|ZP_03441529.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. TW1458... gi\|209160511, gi... - gi\|209399111\|ref\|YP_002269486.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC411... gi\|189377785, gi... - gi\|189377785\|gb\|EDU96201.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC508], gi... gi\|189373015, gi... - gi\|189373015\|gb\|EDU91431.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC869], gi... gi\|208807182, gi... - gi\|208807182\|ref\|ZP_03249519.1\| transcriptional regulator MntR [Escherichia coli O157:H7 str. EC4206... gi\|195936858 - gi\|195936858\|ref\|ZP_03082240.1\| manganese transport regulator MntR [Escherichia coli O157:H7 str. EC...	1.0E-26	[1..153]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRAGTPTT KKVTQLVNVE EHVEGFRQVR EAHRRELIDD YVELISDLII EVGEARQVDM  60
   61 AARLGVSQPT VAKMLKRLAS LGFIQMIPWR GVFLTPEGEK LAQESRERHQ IVENFLLVLG 120
  121 VSPEIARRDA EGMEHHVSQE TLDAFLAFTQ QHGTSAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2h09A
Description:	No description for 2h09A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits