YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194402304, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL254
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194402304, gi....

Description	E-value	Query Range	Subject Range
gi\|33573345 - gi\|33573345\|emb\|CAE37329.1\| [Fe-S] cluster formation/repair protein [Bordetella parapertussis] gi\|33596644 - gi\|33596644\|ref\|NP_884287.1\| scaffold protein [Bordetella parapertussis 12822] gi\|33575695, gi\|... - gi\|33601260\|ref\|NP_888820.1\| scaffold protein [Bordetella bronchiseptica RB50], gi\|33575695\|emb\|CAE3... gi\|33572510, gi\|... - gi\|33592862\|ref\|NP_880506.1\| scaffold protein [Bordetella pertussis Tohama I], gi\|33572510\|emb\|CAE42...	4.0E-51	[1..128]	[1..128]
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	6.0E-51	[1..128]	[1..128]
gi\|115365114, gi... - gi\|115377899\|ref\|ZP_01465085.1\| FeS cluster assembly scaffold IscU [Stigmatella aurantiaca DW4/3-1],...	6.0E-51	[1..128]	[1..128]
gi\|108464265, gi... - gi\|108760385\|ref\|YP_633158.1\| scaffold protein [Myxococcus xanthus DK 1622], gi\|108464265\|gb\|ABF8945...	6.0E-51	[1..128]	[1..128]
gi\|126638539, gi... - gi\|78369006\|ref\|ZP_00839185.1\| FeS cluster assembly scaffold IscU [Shewanella sp. PV-4], gi\|78358967...	7.0E-51	[1..127]	[1..127]
gi\|193223099, gi... - gi\|194289264\|ref\|YP_002005171.1\| scaffold protein [Cupriavidus taiwanensis], gi\|193223099\|emb\|CAQ691... gi\|113525955, gi... - gi\|113867179\|ref\|YP_725668.1\| scaffold protein [Ralstonia eutropha H16], gi\|113525955\|emb\|CAJ92300.1...	8.0E-51	[1..128]	[1..128]
gi\|115422597, gi... - gi\|187478011\|ref\|YP_786035.1\| [Fe-S] cluster formation/repair protein [Bordetella avium 197N], gi\|11...	9.0E-51	[1..127]	[1..127]
gi\|83748486, gi\|... - gi\|83748486\|ref\|ZP_00945508.1\| IscU protein [Ralstonia solanacearum UW551], gi\|83724897\|gb\|EAP72053.... gi\|206595032, gi... - gi\|207743633\|ref\|YP_002260025.1\| iron-binding protein [Ralstonia solanacearum IPO1609], gi\|206595032... gi\|207725258, gi... - gi\|207725258\|ref\|YP_002255654.1\| iron-binding protein [Ralstonia solanacearum MolK2], gi\|206590492\|e...	1.0E-50	[1..126]	[1..126]
gi\|194427319, gi... - gi\|75211495\|ref\|ZP_00711585.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|215487879, gi... - gi\|215487879\|ref\|YP_002330310.1\| scaffold protein [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|75237725, gi\|... - gi\|75237725\|ref\|ZP_00721741.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|209913265, gi... - gi\|209920006\|ref\|YP_002294090.1\| scaffold protein [Escherichia coli SE11], gi\|209913265\|dbj\|BAG78339... gi\|157077623, gi... - gi\|75187281\|ref\|ZP_00700548.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218548034, gi... - gi\|218548034\|ref\|YP_002381825.1\| scaffold protein [Escherichia fergusonii ATCC 35469], gi\|218355575\|... gi\|157162004, gi... - gi\|75196546\|ref\|ZP_00706616.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|217327068, gi... - gi\|217327068\|ref\|ZP_03443151.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. TW... gi\|188489645, gi... - gi\|75515868\|ref\|ZP_00738003.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218366224, gi... - gi\|218559455\|ref\|YP_002392368.1\| scaffold protein [Escherichia coli S88], gi\|218366224\|emb\|CAR03971.... gi\|73856532, gi\|... - gi\|74313055\|ref\|YP_311474.1\| scaffold protein [Shigella sonnei Ss046], gi\|73856532\|gb\|AAZ89239.1\| co... gi\|218555054, gi... - gi\|218555054\|ref\|YP_002387967.1\| scaffold protein [Escherichia coli IAI1], gi\|218361822\|emb\|CAQ99420... gi\|191172583, gi... - gi\|75240446\|ref\|ZP_00724380.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218352888, gi... - gi\|218696156\|ref\|YP_002403823.1\| scaffold protein [Escherichia coli 55989], gi\|218352888\|emb\|CAU9868... gi\|75257953, gi\|... - gi\|75257953\|ref\|ZP_00729427.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218690649, gi... - gi\|218690649\|ref\|YP_002398861.1\| scaffold protein [Escherichia coli ED1a], gi\|218428213\|emb\|CAV17850... gi\|189405048, gi... - gi\|189405048\|ref\|ZP_03007669.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|189368424, gi... - gi\|189403946\|ref\|ZP_02786152.2\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|195936675 - gi\|195936675\|ref\|ZP_03082057.1\| scaffold protein [Escherichia coli O157:H7 str. EC4024] gi\|189405746, gi... - gi\|189405746\|ref\|ZP_03007925.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|83570749, gi\|... - gi\|83570749\|ref\|ZP_00922192.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Shigella dy... gi\|208813237, gi... - gi\|208813237\|ref\|ZP_03254566.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|83586821, gi\|... - gi\|83586821\|ref\|ZP_00925452.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|208726728, gi... - gi\|208806927\|ref\|ZP_03249264.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|209159796, gi... - gi\|209398396\|ref\|YP_002272004.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. E... gi\|208820424, gi... - gi\|208820424\|ref\|ZP_03260744.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... EG13395 - iron-sulfur cluster assembly scaffold protein / Iron-sulfur cluster assembly scaffold protein gi\|218433129, gi... - gi\|218706032\|ref\|YP_002413551.1\| scaffold protein [Escherichia coli UMN026], gi\|218433129\|emb\|CAR140... gi\|218371025, gi... - gi\|218701039\|ref\|YP_002408668.1\| scaffold protein [Escherichia coli IAI39], gi\|218371025\|emb\|CAR1885... gi\|1799937, gi\|8... - gi\|89109335\|ref\|AP_003115.1\| scaffold protein [Escherichia coli str. K-12 substr. W3110], gi\|1799937... gi\|91211856, gi\|... - gi\|91211856\|ref\|YP_541842.1\| scaffold protein [Escherichia coli UTI89], gi\|91073430\|gb\|ABE08311.1\| i... gi\|227887565, gi... - gi\|227887565\|ref\|ZP_04005370.1\| iron-sulfur (Fe-S) cluster formation protein NifU [Escherichia coli ... gi\|237705040, gi... - gi\|237705040\|ref\|ZP_04535521.1\| scaffold protein [Escherichia sp. 3_2_53FAA], gi\|226901406\|gb\|EEH876... gi\|238901694, gi... - gi\|238901694\|ref\|YP_002927490.1\| scaffold protein [Escherichia coli BW2952], gi\|238863511\|gb\|ACR6550... gi\|251785856, gi... - gi\|251785856\|ref\|YP_003000160.1\| hypothetical protein B21_02385 [Escherichia coli BL21], gi\|24237812... gi\|253978571, gi... - gi\|254289264\|ref\|YP_003055012.1\| scaffold protein [Escherichia coli BL21(DE3)], gi\|253978571\|gb\|ACT4... gi\|169889974, gi... - gi\|170082139\|ref\|YP_001731459.1\| scaffold protein [Escherichia coli str. K-12 substr. DH10B], gi\|169... gi\|169754116, gi... - gi\|170019188\|ref\|YP_001724142.1\| scaffold protein [Escherichia coli ATCC 8739], gi\|169754116\|gb\|ACA7... gi\|187770617, gi... - gi\|187775822\|ref\|ZP_02992728.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|170520725, gi... - gi\|170683007\|ref\|YP_001744718.1\| FeS cluster assembly scaffold IscU [Escherichia coli SMS-3-5], gi\|1... gi\|189009962, gi... - gi\|189009962\|ref\|ZP_03006157.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|188017127, gi... - gi\|188024722\|ref\|ZP_02997219.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|189403142, gi... - gi\|189403142\|ref\|ZP_03006972.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|189356590, gi... - gi\|189402263\|ref\|ZP_03006649.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... ISCU_SHIFL - Iron-sulfur cluster assembly scaffold protein IscU OS=Shigella flexneri GN=iscU PE=3 SV=1 ISCU_ECOL6 - Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|24052952, gi\|... - gi\|24113858\|ref\|NP_708368.1\| scaffold protein [Shigella flexneri 2a str. 301], gi\|24052952\|gb\|AAN440... ISCU_ECO57 - Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli O157:H7 GN=iscU PE=1 SV=1 gi\|30063919, gi\|... - gi\|30063919\|ref\|NP_838090.1\| scaffold protein [Shigella flexneri 2a str. 2457T], gi\|30042175\|gb\|AAP1... gi\|15803056, gi\|... - gi\|15803056\|ref\|NP_289086.1\| scaffold protein [Escherichia coli O157:H7 EDL933], gi\|12516933\|gb\|AAG5... EG13395 - iron-sulfur cluster assembly scaffold protein / Iron-sulfur cluster assembly scaffold protein NIFU_ECOLI - NifU-like protein - Escherichia coli gi\|115513881, gi... - gi\|117624757\|ref\|YP_853670.1\| scaffold protein [Escherichia coli APEC O1], gi\|115513881\|gb\|ABJ01956.... gi\|124529518, gi... - gi\|124529518\|ref\|ZP_01700488.1\| FeS cluster assembly scaffold IscU [Escherichia coli B], gi\|12449982... gi\|254162503, gi... - gi\|254162503\|ref\|YP_003045611.1\| scaffold protein [Escherichia coli B str. REL606], gi\|253974404\|gb\|... gi\|254794479, gi... - gi\|254794479\|ref\|YP_003079316.1\| scaffold protein [Escherichia coli O157:H7 str. TW14359], gi\|254593... gi\|15832649, gi\|... - gi\|15832649\|ref\|NP_311422.1\| scaffold protein [Escherichia coli O157:H7 str. Sakai], gi\|13362866\|dbj... gi\|110344286, gi... - gi\|110642694\|ref\|YP_670424.1\| scaffold protein [Escherichia coli 536], gi\|110344286\|gb\|ABG70523.1\| N... gi\|110806460, gi... - gi\|110806460\|ref\|YP_689980.1\| scaffold protein [Shigella flexneri 5 str. 8401], gi\|110616008\|gb\|ABF0... NIFU_ECOL6 - NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1 gi\|82777912, gi\|... - gi\|82777912\|ref\|YP_404261.1\| scaffold protein [Shigella dysenteriae Sd197], gi\|81242060\|gb\|ABB62770....	1.0E-50	[1..128]	[1..128]
gi\|49077878 - gi\|49077878\|gb\|AAT49727.1\| PA3813 [synthetic construct]	1.0E-50	[1..126]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSEKVIDH YENPRNVGSF DNNDDNVGSG MVGAPACGDV MKLQIKVNDE GIIEDARFKT  60
   61 YGCGSAIASS SLVTEWVKGK SLDEAQAIKN TDIADELELP PVKIHCSILA EDAIKAAIAD 120
  121 YKSKREAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: