YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190406868
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190406868.

Description	E-value	Query Range	Subject Range
DAM1 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced... gi\|151943394 - gi\|151943394\|gb\|EDN61705.1\| duo1 and dam1 interacting protein [Saccharomyces cerevisiae YJM789] gi\|190406868 - gi\|190406868\|gb\|EDV10135.1\| DASH complex subunit DAM1 [Saccharomyces cerevisiae RM11-1a] DAM1_YEAST - DASH complex subunit DAM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAM1 PE=1 SV=2	0.0	[1..343]	[1..343]
gi\|15219566, gi\|... - gi\|4204314\|gb\|AAD10695.1\| Hypothetical protein [Arabidopsis thaliana], pir\|\|H86168 hypothetical prot...	0.009	[30..260]	[723..963]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDKAKLGT TRSATEYRLS IGSAPTSRRS SMGESSSLMK FADQEGLTSS VGEYNENTIQ  60
   61 QLLLPKIREL SDSIITLDSN FTRLNFIHES LADLNESLGS LLYGIMSNSW CVEFSQAPHD 120
  121 IQDDLIAIKQ LKSLEDEKNN LVMELSNMER GIKRKKDEQG ENDLAKASQN KQFNQPLFPS 180
  181 SQVRKYRSYD NRDKRKPSKI GNNLQVENEE DYEDDTSSEA SFVLNPTNIG MSKSSQGHVT 240
  241 KTTRLNNNTN SKLRRKSILH TIRNSIASGA DLPIENDNVV NLGDLHPNNR ISLGSGAARV 300
  301 VNGPVTKNRN SMFSGRAERK PTESRHSVAK KTEKKINTRP PFR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits