YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213162084
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213162084.

Description	E-value	Query Range	Subject Range
gi\|77956525 - gi\|77956525\|ref\|ZP_00820617.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia bercovieri A... gi\|238795874, gi... - gi\|77963114\|ref\|ZP_00826927.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia mollaretii A...	0.0	[1..466]	[1..466]
SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1 SYN_YERP3 - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 ... SYN_YERPE - Asparagine--tRNA ligase OS=Yersinia pestis GN=asnS PE=3 SV=1 SYN_YERPA - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1 SYN_YERPN - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1 gi\|21959647, gi\|... - gi\|22126636\|ref\|NP_670059.1\| asparaginyl-tRNA synthetase [Yersinia pestis KIM], gi\|21959647\|gb\|AAM86... SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=asnS PE=3 SV=1 gi\|45441008, gi\|... - gi\|45441008\|ref\|NP_992547.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001... gi\|149366669, gi... - gi\|149366669\|ref\|ZP_01888703.1\| asparaginyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|14929104... gi\|15979461, gi\|... - gi\|218928560\|ref\|YP_002346435.1\| asparaginyl-tRNA synthetase [Yersinia pestis CO92], gi\|16121692\|ref... SYN_YERPP - Asparagine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1 gi\|229841386, gi... - gi\|229841386\|ref\|ZP_04461545.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|229843491, gi... - gi\|229843491\|ref\|ZP_04463637.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|165938931, gi... - gi\|165938931\|ref\|ZP_02227484.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|162419705, gi... - gi\|77636026\|ref\|ZP_00798104.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis Angol... gi\|165924584, gi... - gi\|165924584\|ref\|ZP_02220416.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|167050713, gi... - gi\|167400005\|ref\|ZP_02305523.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG0... gi\|166207346, gi... - gi\|166211575\|ref\|ZP_02237610.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42... gi\|167057132, gi... - gi\|167424283\|ref\|ZP_02316036.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.... gi\|166962464, gi... - gi\|167419723\|ref\|ZP_02311476.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|186697881, gi... - gi\|186894855\|ref\|YP_001871967.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], gi... gi\|169751407, gi... - gi\|170024873\|ref\|YP_001721378.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], gi...	0.0	[1..466]	[1..466]
gi\|238728303, gi... - gi\|77979213\|ref\|ZP_00834633.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia intermedia A...	0.0	[1..466]	[1..466]
gi\|194450065, gi... - gi\|194450065\|ref\|YP_002044994.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|197249609, gi... - gi\|197249609\|ref\|YP_002145920.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=asnS PE=3... gi\|200390273, gi... - gi\|200390273\|ref\|ZP_03216884.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... SYN_SALTY - Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|167993358, gi... - gi\|205328543\|gb\|EDZ15307.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=asnS] [protein=asparaginyl-tRNA synthetase] [protein_id=YP_005236722.1] [location=complement(1... gi\|205337229, gi... - gi\|205337229\|gb\|EDZ23993.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205346905, gi... - gi\|205346905\|gb\|EDZ33536.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|194443471, gi... - gi\|194443471\|ref\|YP_002040200.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|167552996, gi... - gi\|205322466\|gb\|EDZ10305.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	0.0	[1..466]	[1..466]
SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=asnS PE=3 SV=1 SYN_SALCH - Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1 gi\|224582810, gi... - gi\|224582810\|ref\|YP_002636608.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1	0.0	[1..466]	[1..466]
gi\|238722626, gi... - gi\|77974872\|ref\|ZP_00830410.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia frederikseni...	0.0	[1..466]	[1..466]
gi\|89104665 - gi\|89104665\|ref\|ZP_01177202.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis biova...	0.0	[1..466]	[1..466]
SYN_SHESM - Asparagine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1	0.0	[1..466]	[1..466]
SYN_PHOLL - Asparaginyl-tRNA synthetase OS=Photorhabdus luminescens subsp. laumondii GN=asnS PE=3 SV=1 SYN_PHOLL - Asparagine--tRNA ligase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	0.0	[1..466]	[1..466]
SYN_SHESA - Asparagine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=asnS PE=3 SV=1	0.0	[1..466]	[1..466]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVPVADVL QGRVAVDQEV TVRGWVRTRR DSKAGISFLA VYDGSCFDPV QAVINNSLPN  60
   61 YNEEVLHLTT GCSVVVTGKV VASPGQGQSF EIQATKVEVA GWVEDPDTYP MAAKRHSIEY 120
  121 LREVAHLRPR TNLIGAVARV RHTLAQALHR FFDEQGFFWV STPLITASDT EGAGEMFRVS 180
  181 TLDLENLPRN DQGRVDFDKD FFGKESFLTV SGQLNGETYA CALSKIYTFG PTFRAENSNT 240
  241 SRHLAEFWML EPEVAFADLE DNARLAEAML KYVFKAVLEE RADDMKFFAE RVDKDAIARL 300
  301 ERFVSTDFAQ VDYTDAVAIL ERCGKTFENP VFWGVDLSSE HERYLAEEHF KAPVVVKNYP 360
  361 KEIKAFYMRL NEDGKTVAAM DVLAPGIGEI IGGSQREERL DVLDARMAEM GLNKEDYWWY 420
  421 RDLRRYGTVP HSGFGLGFER LIAYVTGVQN VRDVIPFPRT PRNASF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits