YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194434041, gi...
Organism:	Shigella dysenteriae 1012
Length:	720 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194434041, gi....

Description	E-value	Query Range	Subject Range
gi\|2625021 - gi\|2625021\|gb\|AAC46278.1\| DNA helicase II [Serratia marcescens]	645.0	[0..1]	[720..1]
gi\|238912954 - gi\|238912954\|ref\|ZP_04656791.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serov... gi\|56130062, gi\|... - gi\|56415805\|ref\|YP_152880.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar ... gi\|62130053, gi\|... - gi\|62182420\|ref\|YP_218837.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar ... gi\|224470294, gi... - gi\|224585766\|ref\|YP_002639565.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Paraty... gi\|206710956, gi... - gi\|207859153\|ref\|YP_002245804.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|204930325, gi... - gi\|204930325\|ref\|ZP_03221302.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana... gi\|200388338, gi... - gi\|200388338\|ref\|ZP_03214950.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow... gi\|198245946, gi... - gi\|198245946\|ref\|YP_002217880.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin... gi\|197364735, gi... - gi\|197364735\|ref\|YP_002144372.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|194734777, gi... - gi\|194734777\|ref\|YP_002116880.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwar... gi\|194456900, gi... - gi\|194470536\|ref\|ZP_03076520.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentuck... gi\|194451500, gi... - gi\|194451500\|ref\|YP_002047963.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|194444550, gi... - gi\|194444550\|ref\|YP_002043181.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Newpor... gi\|205340965, gi... - gi\|205340965\|gb\|EDZ27729.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden... gi\|205348080, gi... - gi\|205348080\|gb\|EDZ34711.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. ... gi\|205336527, gi... - gi\|205336527\|gb\|EDZ23291.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg ... gi\|168238404, gi... - gi\|197288763\|gb\|EDY28138.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengr... gi\|168233884, gi... - gi\|205332069\|gb\|EDZ18833.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|161366434, gi... - gi\|161617070\|ref\|YP_001591035.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero...	642.0	[0..1]	[720..1]
gi\|75238266 - gi\|75238266\|ref\|ZP_00722265.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E11001... gi\|75197699 - gi\|75197699\|ref\|ZP_00707769.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli HS]	642.0	[0..1]	[720..19]
gi\|85060320, gi\|... - gi\|85060320\|ref\|YP_456022.1\| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans'], gi\|8...	642.0	[0..1]	[720..1]
gi\|75177773 - gi\|75177773\|ref\|ZP_00697838.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella boydii BS512]	642.0	[0..1]	[720..19]
gi\|226838716, gi... - gi\|254039025\|ref\|ZP_04873076.1\| DNA helicase II [Escherichia sp. 1_1_43], gi\|226838716\|gb\|EEH70744.1... gi\|75256260 - gi\|75256260\|ref\|ZP_00727938.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E22] gi\|75209557 - gi\|75209557\|ref\|ZP_00709778.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli B171] gi\|83569352 - gi\|83569352\|ref\|ZP_00920807.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella dysenteriae 10...	642.0	[0..1]	[720..19]
gi\|91074912, gi\|... - gi\|91213338\|ref\|YP_543324.1\| DNA helicase II [Escherichia coli UTI89], gi\|91074912\|gb\|ABE09793.1\| DN... gi\|226902993, gi... - gi\|237702822\|ref\|ZP_04533303.1\| DNA helicase II [Escherichia sp. 3_2_53FAA], gi\|226902993\|gb\|EEH8925... gi\|26110983, gi\|... - gi\|26250553\|ref\|NP_756593.1\| DNA helicase II [Escherichia coli CFT073], gi\|26110983\|gb\|AAN83167.1\|AE... gi\|83585938 - gi\|83585938\|ref\|ZP_00924577.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli 101-1] gi\|75236878 - gi\|75236878\|ref\|ZP_00720947.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli F11]	642.0	[0..1]	[720..19]
gi\|75230777 - gi\|75230777\|ref\|ZP_00717240.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli B7A]	641.0	[0..1]	[720..19]
UVRD_SALTY - DNA helicase II OS=Salmonella typhimurium GN=uvrD PE=3 SV=2 lcl\|NC_016856.1_... - [gene=uvrD] [protein=DNA-dependent helicase II] [protein_id=YP_005240211.1] [location=4169232..41713... UVRD_SALTY - DNA helicase II OS=Salmonella typhimurium GN=uvrD PE=3 SV=2 gi\|197242160, gi... - gi\|197263905\|ref\|ZP_03163979.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpa... UVRD_SALTY - DNA helicase II OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uvrD PE=3 SV=2 gi\|167993889, gi... - gi\|205328129\|gb\|EDZ14893.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:...	641.0	[0..1]	[720..1]
gi\|75188558 - gi\|75188558\|ref\|ZP_00701825.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E24377...	641.0	[0..1]	[720..19]

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Predicted Domain #1

Region A:
Residues: [1-720]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSYLLDSL NDKQREAVAA PRSNLLVLAG AGSGKTRVLV HRIAWLMSVE NCSPYSIMAV  60
   61 TFTNKAAAEM RHRIGQLMGT SQGGMWVGTF HGLAHRLLRA HHMDANLPQD FQILDSEDQL 120
  121 RLLKRLIKAM NLDEKQWPPR QAMWYINSQK DEGLRPHHIQ SYGNPVEQTW QKVYQAYQEA 180
  181 CDRAGLVDFA ELLLRAHELW LNKPHILQHY RERFTNILVD EFQDTNNIQY AWIRLLAGDT 240
  241 GKVMIVGDDD QSIYGWRGAQ VENIQRFLND FPGAETIRLE QNYRSTSNIL SAANALIENN 300
  301 NGRLGKKLWT DGADGEPISL YCAFNELDEA RFVVNRIKTW QDNGGALAEC AILYRSNAQS 360
  361 RVLEEALLQA SMPYRIYGGM RFFERQEIKD ALSYLRLIAN RNDDAAFERV VNTPTRGIGD 420
  421 RTLDVVRQTS RDRQLTLWQA CRELLQEKAL AGRAASALQR FMELIDALAQ ETADMPLHVQ 480
  481 TDRVIKDSGL RTMYEQEKGE KGQTRIENLE ELVTATRQFS YNEEDEDLMP LQAFLSHAAL 540
  541 EAGEGQADTW QDAVQLMTLH SAKGLEFPQV FIVGMEEGMF PSQMSLDEGG RLEEERRLAY 600
  601 VGVTRAMQKL TLTYAETRRL YGKEVYHRPS RFIGELPEEC VEEVRLRATV SRPVSHQRMG 660
  661 TPMVENDSGY KLGQRVRHAK FGEGTIVNME GSGEHSRLQV AFQGQGIKWL VAAYARLESV 720
  721

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	167.0
Match:	2is1A
Description:	No description for 2is1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits