YRC Public Data Repository - Protein Structure Prediction

Protein:	FLHD_ECOSE
Organism:	Escherichia coli SE11
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLHD_ECOSE.

Description	E-value	Query Range	Subject Range
gi\|67009939 - gi\|67009939\|dbj\|BAD99452.1\| transcriptional activator [Shigella boydii]	182.0	[0..1]	[119..1]
gi\|13362070 - gi\|13362070\|dbj\|BAB36025.1\| regulator of flagellar biosynthesis FlhD [Escherichia coli O157:H7 str. ... gi\|13362070 - gi\|13362070\|dbj\|BAB36025.1\| regulator of flagellar biosynthesis FlhD [Escherichia coli O157:H7] gi\|209767206, gi... - pir\|\|F85802 regulator of flagellar biosynthesis FlhD [imported] - Escherichia coli (strain O157:H7, ... gi\|15802304, gi\|... - gi\|15802304\|ref\|NP_288329.1\| transcriptional activator FlhD [Escherichia coli O157:H7 EDL933], gi\|12...	182.0	[0..1]	[119..1]
FLHD_SHIBS - Flagellar transcriptional regulator FlhD OS=Shigella boydii serotype 4 (strain Sb227) GN=flhD PE=3 S... gi\|67009919, gi\|... - gi\|67009919\|dbj\|BAD99440.1\| transcriptional activator [Shigella flexneri], gi\|67009916\|dbj\|BAD99438.... gi\|67009925, gi\|... - gi\|67009925\|dbj\|BAD99444.1\| transcriptional activator [Shigella boydii], gi\|67009922\|dbj\|BAD99442.1\|...	181.0	[0..1]	[119..1]
gi\|67009928 - gi\|67009928\|dbj\|BAD99446.1\| transcriptional activator [Shigella dysenteriae]	180.0	[0..1]	[119..1]
FLHD_SERMA - Flagellar transcriptional regulator FlhD OS=Serratia marcescens GN=flhD PE=3 SV=1	179.0	[0..1]	[119..1]
gi\|1095359, gi\|2... - pir\|\|S61276 gene flhD protein - Serratia liquefaciens, gi\|1095359\|prf\|\|2108367A flhD gene	178.0	[0..1]	[119..1]
gi\|83585508 - gi\|83585508\|ref\|ZP_00924152.1\| hypothetical protein Ecol1_01003238 [Escherichia coli 101-1]	178.0	[0..4]	[119..1]
sp\|B7USR7\|FLHD_ECO27 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=flh... FLHD_ECOL6 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UP... EG10320 - flagellar class II regulon transcriptional activator, with FlhC / Transcriptional activator of flage... gi\|251785340, gi... - gi\|251785340\|ref\|YP_002999644.1\| hypothetical protein B21_01852 [Escherichia coli BL21], gi\|24237761... gi\|253773151, gi... - gi\|253773151\|ref\|YP_003035982.1\| flagellar transcriptional activator [Escherichia coli BL21(DE3)], g... gi\|188493760, gi... - gi\|75513039\|ref\|ZP_00735501.1\| hypothetical protein Ecol5_01002773 [Escherichia coli 53638], gi\|1884... FLHD_ECO24 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=flh... FLHD_ECOHS - Flagellar transcriptional regulator FlhD OS=Escherichia coli O9:H4 (strain HS) GN=flhD PE=3 SV=1 gi\|75209431, gi\|... - gi\|75209431\|ref\|ZP_00709659.1\| hypothetical protein EcolB_01003369 [Escherichia coli B171], gi\|19442... gi\|191168094, gi... - gi\|75228727\|ref\|ZP_00715340.1\| hypothetical protein EcolB7_01002958 [Escherichia coli B7A], gi\|19116... gi\|194434110, gi... - gi\|194434110\|ref\|ZP_03066379.1\| flagellar transcriptional activator FlhD [Shigella dysenteriae 1012]... FLHD_ECOLI - Transcriptional activator flhD - Escherichia coli gi\|75235304, gi\|... - gi\|75235304\|ref\|ZP_00719530.1\| hypothetical protein EcolE1_01002856 [Escherichia coli E110019], gi\|1... FLHD_ECOLC - Flagellar transcriptional regulator FlhD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) ... FLHD_ECOSM - Flagellar transcriptional regulator FlhD OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=flhD PE=3 S... gi\|190906751, gi... - gi\|75239689\|ref\|ZP_00723652.1\| hypothetical protein EcolF_01002886 [Escherichia coli F11], gi\|191173... gi\|75256500, gi\|... - gi\|75256500\|ref\|ZP_00728146.1\| hypothetical protein EcolE2_01003594 [Escherichia coli E22], gi\|19306... FLHD_ECO27 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=flh... FLHD_ECOL5 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=flhD ... gi\|124498837, gi... - gi\|124531098\|ref\|ZP_01701483.1\| Flagellar transcriptional activator, FlhD subunit [Escherichia coli ... gi\|32479531 - gi\|32479531\|gb\|AAO47341.1\| transcriptional regulator FlhD [Escherichia coli O157:H-] FLHD_ECOL6 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O6 GN=flhD PE=3 SV=1 EG10320 - flagellar class II regulon transcriptional activator, with FlhC / Transcriptional activator of flage...	177.0	[0..4]	[119..1]
gi\|56127413, gi\|... - gi\|56413156\|ref\|YP_150231.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ser... gi\|29141434, gi\|... - gi\|29141434\|ref\|NP_804776.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ser... gi\|16760874 - gi\|16760874\|ref\|NP_456491.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ser... gi\|6045175\|dbj\|B... - FlhD [Salmonella typhimurium], FlhD protein [Salmonella typhimurium] gi\|62128135, gi\|... - gi\|62180502\|ref\|YP_216919.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ser... gi\|199601792, gi... - gi\|200389347\|ref\|ZP_03215958.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp.... gi\|197937516, gi... - gi\|198243000\|ref\|YP_002215157.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica... gi\|197362082, gi... - gi\|197362082\|ref\|YP_002141719.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica... gi\|197211843, gi... - gi\|197248140\|ref\|YP_002146095.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp... gi\|16503171, gi\|... - gi\|25300764\|pir\|\|AI0746 flagellar transcription activator FlhD STY2134 [imported] - Salmonella enter... gi\|224468098, gi... - gi\|224583571\|ref\|YP_002637369.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica... gi\|16765267, gi\|... - gi\|16765267\|ref\|NP_460882.1\| transcriptional activator FlhD [Salmonella typhimurium LT2], gi\|1642046... gi\|207856554, gi... - gi\|207856554\|ref\|YP_002243205.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica... gi\|6045175, gi\|2... - gi\|6045175\|dbj\|BAA85314.1\| FlhD protein [Salmonella enterica subsp. enterica serovar Typhimurium], g... gi\|205359818, gi... - gi\|205359818\|ref\|ZP_03224423.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp.... gi\|17017381 - gi\|17017381\|gb\|AAL33643.1\|AF440760_1 FlhD [Salmonella enterica subsp. enterica serovar Pullorum] gi\|205272153, gi... - gi\|205352372\|ref\|YP_002226173.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=flhD] [protein=transcriptional activator FlhD] [protein_id=YP_005237894.1] [location=complemen...	177.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIMHTSELL KHIYDINLSY LLLAQRLIVQ DKASAMFRLG INEEMATTLA ALTLPQMVKL  60
   61 AETNQLVCHF RFDSHQTITQ LTQDSRVDDL QQIHTGIMLS TRLLNDVNQP EEALRKKRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1g8eA
Description:	Flagellar transcriptional activator FlhD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits