YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213580848
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213580848.

Description	E-value	Query Range	Subject Range
gi\|198243657, gi... - gi\|198243657\|ref\|YP_002213975.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|199606048, gi... - gi\|200388950\|ref\|ZP_03215562.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|194450804, gi... - gi\|194450804\|ref\|YP_002043990.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|197243519, gi... - gi\|197265264\|ref\|ZP_03165338.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|16763410, gi\|... - gi\|16763410\|ref\|NP_459025.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16418514\|... gi\|168464453, gi... - gi\|195632685\|gb\|EDX51139.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|194444266, gi... - gi\|194444266\|ref\|YP_002039249.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|205336659, gi... - gi\|205336659\|gb\|EDZ23423.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168262319, gi... - gi\|205348942\|gb\|EDZ35573.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205323131, gi... - gi\|205323131\|gb\|EDZ10970.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|167989870, gi... - gi\|205331402\|gb\|EDZ18166.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161612337, gi... - gi\|161612337\|ref\|YP_001586302.1\| hypothetical protein SPAB_00025 [Salmonella enterica subsp. enteric... gi\|62178589, gi\|... - gi\|62178589\|ref\|YP_215006.1\| hypothetical protein SC0019 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=STM14_0025] [protein=putative cytoplasmic protein] [protein_id=YP_005235658.1] [location=23335... gi\|206707338, gi... - gi\|207855535\|ref\|YP_002242186.1\| hypothetical protein SEN0019 [Salmonella enterica subsp. enterica s... gi\|224466387, gi... - gi\|224581860\|ref\|YP_002635658.1\| hypothetical protein SPC_0022 [Salmonella enterica subsp. enterica ...	0.0	[1..234]	[1..234]
gi\|56126551, gi\|... - gi\|56412294\|ref\|YP_149369.1\| hypothetical protein SPA0020 [Salmonella enterica subsp. enterica serov... gi\|197361231, gi... - gi\|197361231\|ref\|YP_002140866.1\| hypothetical protein SSPA0018 [Salmonella enterica subsp. enterica ...	0.0	[1..234]	[1..234]
gi\|12513212, gi\|... - gi\|15800101\|ref\|NP_286113.1\| putative DNA-binding transcriptional regulator [Escherichia coli O157:H... gi\|15829679, gi\|... - gi\|15829679\|ref\|NP_308452.1\| putative DNA-binding transcriptional regulator [Escherichia coli O157:H... gi\|170079962, gi... - gi\|170079962\|ref\|YP_001729282.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... gi\|75256748 - gi\|75256748\|ref\|ZP_00728353.1\| COG2186: Transcriptional regulators [Escherichia coli E22] gi\|218350565, gi... - gi\|218693833\|ref\|YP_002401500.1\| putative DNA-binding transcriptional regulator [Escherichia coli 55... gi\|73854419, gi\|... - gi\|74310942\|ref\|YP_309361.1\| putative DNA-binding transcriptional regulator [Shigella sonnei Ss046],... gi\|16128360\|ref\|... - hypothetical protein [Escherichia coli], predicted DNA-binding transcriptional regulator [Escherichi... YAIV_ECOLI - Hypothetical protein yaiV - Escherichia coli gi\|238899665, gi... - gi\|238899665\|ref\|YP_002925461.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... gi\|85674516, gi\|... - gi\|89107246\|ref\|AP_001026.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|1786573, gi\|1... - gi\|1786573\|gb\|AAC73478.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-1... YAIV_ECO57 - Uncharacterized protein yaiV OS=Escherichia coli O157:H7 GN=yaiV PE=4 SV=1	9.0E-83	[28..234]	[21..222]
gi\|75189443 - gi\|75189443\|ref\|ZP_00702710.1\| COG2186: Transcriptional regulators [Escherichia coli E24377A] gi\|218430752, gi... - gi\|218703655\|ref\|YP_002411174.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM... gi\|218698722, gi... - gi\|218698722\|ref\|YP_002406351.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218552934, gi... - gi\|218552934\|ref\|YP_002385847.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|209910844, gi... - gi\|209917585\|ref\|YP_002291669.1\| putative DNA-binding transcriptional regulator [Escherichia coli SE...	4.0E-82	[28..234]	[21..222]
gi\|75209932 - gi\|75209932\|ref\|ZP_00710121.1\| COG2186: Transcriptional regulators [Escherichia coli B171]	5.0E-82	[28..234]	[21..222]
gi\|26246374, gi\|... - gi\|26246374\|ref\|NP_752413.1\| putative DNA-binding transcriptional regulator [Escherichia coli CFT073... gi\|237707639, gi... - gi\|237707639\|ref\|ZP_04538120.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227884624, gi... - gi\|227884624\|ref\|ZP_04002429.1\| DNA-binding transcriptional regulator [Escherichia coli 83972], gi\|2... gi\|218557284, gi... - gi\|218557284\|ref\|YP_002390197.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... gi\|91209436, gi\|... - gi\|91209436\|ref\|YP_539422.1\| putative DNA-binding transcriptional regulator [Escherichia coli UTI89]... gi\|117622638, gi... - gi\|117622638\|ref\|YP_851551.1\| putative DNA-binding transcriptional regulator [Escherichia coli APEC ...	1.0E-81	[28..234]	[21..222]
gi\|110640636, gi... - gi\|110640636\|ref\|YP_668364.1\| putative DNA-binding transcriptional regulator [Escherichia coli 536],... gi\|190906210, gi... - gi\|191173501\|ref\|ZP_03035028.1\| hypothetical protein EcF11_1702 [Escherichia coli F11], gi\|190906210...	3.0E-81	[28..234]	[6..207]
gi\|213161238 - gi\|213161238\|ref\|ZP_03346948.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|197363391, gi... - gi\|197363391\|ref\|YP_002143028.1\| putative DNA-binding transcriptional regulator [Salmonella enterica... gi\|213647655 - gi\|213647655\|ref\|ZP_03377708.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|25359147, gi\|... - gi\|25359147\|pir\|\|AE0548 conserved hypothetical protein STY0406 [imported] - Salmonella enterica subs... gi\|213615909 - gi\|213615909\|ref\|ZP_03371735.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|213581931 - gi\|213581931\|ref\|ZP_03363757.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|213425183 - gi\|213425183\|ref\|ZP_03357933.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|29142876, gi\|... - gi\|29142876\|ref\|NP_806218.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub... gi\|214002263 - gi\|214002263\|ref\|ZP_03412998.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|16759352 - gi\|16759352\|ref\|NP_454969.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub... gi\|213854621 - gi\|213854621\|ref\|ZP_03382861.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|56128727, gi\|... - gi\|56414470\|ref\|YP_151545.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub...	2.0E-80	[28..234]	[6..207]
gi\|81244277, gi\|... - gi\|82542866\|ref\|YP_406813.1\| putative DNA-binding transcriptional regulator [Shigella boydii Sb227],...	2.0E-79	[28..234]	[21..222]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKMMNDAFA KDNNENLLHS FLFSQQAKPH AAIDALFSAL LPFGQPFTLG IGDEFYLQAN  60
   61 DEHYIVLLES GIVSFCRDDN RLHISSSFAP SVVGMVDSYG ATYNVPARPE HFLLAETVCS 120
  121 GRFVRLPDFI KIADECDLWH DVARCLAYRL MVMSARDREL VGVDSYLKVR ALLIEIWAYP 180
  181 QAYRENIIVL NFIQRRTGIS RSRTMKILSE LKKGGYIHID NGRLTALGKL PVAY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.57
Match:	1zybA
Description:	Crystal structure of transcription regulator from Bacteriodes thetaiotaomicron VPI-5482 at 2.15 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits