YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|221321365
Organism: Bacillus subtilis subsp. subtilis str. SMY
Length: 664 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221321365.

Description E-value Query
Range
Subject
Range
gi|52078533, gi|... - gi|52783895|ref|YP_089724.1| methionyl-tRNA synthetase [Bacillus licheniformis ATCC 14580], gi|52346...
590.0 [0..1] [664..1]

Back

Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQENNTFYI TTPIYYPSGK LHIGHAYTTV AGDAMARYKR LKGFDVRYLT GTDEHGQKIQ  60
   61 QKAEQENITP QEYVDRAAAD IQKLWKQLEI SNDDFIRTTE KRHKVVIEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 108.0
Match: 2csxA
Description: Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [110-664]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFQKLLDNGD IYLDEYEGWY SIPDETFYTE TQLVDIERNE KGEVIGGKSP DSGHPVELIK  60
   61 EESYFFRMGK YADRLLKYYE ENPTFIQPES RKNEMINNFI KPGLEDLAVS RTTFDWGVKV 120
  121 PENPKHVVYV WIDALFNYLT ALGYDTENDE LYQKYWPADV HLVGKEIVRF HTIYWPIMLM 180
  181 ALDLPLPKQV FAHGWLLMKD GKMSKSKGNV VDPVTLIERY GLDELRYYLL REVPFGSDGV 240
  241 FTPEGFVERI NYDLANDLGN LLNRTVAMIN KYFDGQIGSY KGAVTEFDHT LTSVAEETVK 300
  301 AYEKAMENME FSVALSTLWQ LISRTNKYID ETAPWVLAKD PAKEEELRSV MYHLAESLRI 360
  361 SAVLLQPFLT KTPEKMFEQL GITDESLKAW DSITAFGQLK DTKVQKGEPL FPRLEAEEEI 420
  421 AYIKGKMQGS APAKEETKEE EPQEVDRLPE ITIDQFMDVE LRVAEVIEAE PVKKADRLLK 480
  481 LQLDLGFEKR QVVSGIAKHY TPEELVGKKL VCVTNLKPVK LRGELSQGMI LAGEADGVLK 540
  541 VVSIDQSLPK GTRIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.09691
Match: 1wz2A
Description: The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle