YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190404626
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190404626.

Description	E-value	Query Range	Subject Range
gi\|190404626 - gi\|190404626\|gb\|EDV07893.1\| transcriptional adapter 2 [Saccharomyces cerevisiae RM11-1a] ADA2_YEAST - Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADA2 PE=1 SV=1 gi\|151942413 - gi\|151942413\|gb\|EDN60769.1\| Ada histone acetyltransferase complex component [Saccharomyces cerevisia... gi\|207346269 - gi\|207346269\|gb\|EDZ72816.1\| YDR448Wp-like protein [Saccharomyces cerevisiae AWRI1631] ADA2 - Transcription coactivator, component of the ADA and SAGA transcriptional adaptor/HAT (histone acetyl...	0.0	[1..434]	[1..434]
ADA2_SCHPO - Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada2 PE=1 SV=1 SPCC24B10.08c - histone acetyltransferase complex subunit Ada2	0.0	[4..434]	[5..433]
gi\|3258663 - gi\|3258663\|gb\|AAC26659.1\| KL04P [Homo sapiens]	0.0	[2..434]	[12..440]
gi\|162457760, gi... - gi\|18642468\|emb\|CAD22882.1\| transcriptional adaptor [Zea mays], gi\|162457760\|ref\|NP_001105146.1\| tra...	0.0	[5..431]	[51..555]
TAD2B_ARATH - Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1	3.0E-99	[4..432]	[44..483]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-97	[4..432]	[30..476]
gi\|18101632 - gi\|18101632\|gb\|AAL14200.2\| transcriptional adaptor-like protein [Hypocrea jecorina]	6.0E-96	[3..434]	[17..511]
gi\|5924306 - gi\|5924306\|gb\|AAD56544.1\|AF184590_1 ADA2-like protein [Plasmodium falciparum]	4.0E-94	[5..430]	[660..1098]

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Predicted Domain #1

Region A:
Residues: [1-40]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKFHCDVC SADCTNRVRV SCAICPEYDL CVPCFSQGSY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.79588
Match:	PF00569
Description:	Zinc finger, ZZ type

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [41-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGKHRPYHDY RIIETNSYPI LCPDWGADEE LQLIKGAQTL GLGNWQDIAD HIGSRGKEEV  60
   61 KEHYLKYYL

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.16
Match:	1h88C
Description:	c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [110-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESKYYPIPDI TQNIHVPQDE FLEQRRHRIE SFRERPLEPP RKPMASVPSC HEVQGFMPGR  60
   61 LEFETEFENE AEGPVKDMVF EPDDQPLDIE LKFAILDIYN SRLTTRAEKK RLLFENHLMD 120
  121 YRKLQAIDKK RSKEAKELYN RIKPFARVMT AQDFEEFSKD ILEELHCRAR IQQLQEWRSN 180
  181 GLTTLEAGLK YERDKQARIS SFEKFGASTA ASLSEGNSRY RSNSAHRSNA EYSQNYSENG 240
  241 GRKKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.522879
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [355-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISDIQHAP DYALLSNDEQ QLCIQLKILP KPYLVLKEVM FRELLKTGGN LSKSACRELL  60
   61 NIDPIKANRI YDFFQSQNWM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits