YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197937759, gi...
Organism:	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197937759, gi....

Description	E-value	Query Range	Subject Range
gi\|62181818, gi\|... - gi\|62181818\|ref\|YP_218235.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric...	5.0E-69	[1..211]	[1..211]
gi\|218696897, gi... - gi\|218696897\|ref\|YP_002404564.1\| toluene transporter subunit: membrane component of ABC superfamily ... YRBC_ECOLI - Protein yrbC precursor - Escherichia coli gi\|218362530, gi... - gi\|218555762\|ref\|YP_002388675.1\| toluene transporter subunit: membrane component of ABC superfamily ... MLAC_SHIFL - Probable phospholipid-binding protein MlaC OS=Shigella flexneri GN=mlaC PE=3 SV=1 gi\|24053664, gi\|... - gi\|24114481\|ref\|NP_708991.1\| hypothetical protein SF3232 [Shigella flexneri 2a str. 301], gi\|2405366... EG12798 - ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein / Putative phospholipid-... gi\|192956350, gi... - gi\|193070291\|ref\|ZP_03051234.1\| toluene tolerance protein Ttg2D [Escherichia coli E110019], gi\|19295... gi\|170082726, gi... - gi\|170082726\|ref\|YP_001732046.1\| organic solvent ABC transporter [Escherichia coli str. K-12 substr.... gi\|30064530, gi\|... - gi\|30064530\|ref\|NP_838701.1\| hypothetical protein S3450 [Shigella flexneri 2a str. 2457T], gi\|300427... gi\|209913926, gi... - gi\|209920667\|ref\|YP_002294751.1\| putative transport protein [Escherichia coli SE11], gi\|209913926\|db... EG12798 - ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein / Putative phospholipid-... gi\|194417278, gi... - gi\|194434499\|ref\|ZP_03066759.1\| toluene tolerance protein Ttg2D [Shigella dysenteriae 1012], gi\|1944... gi\|110616606, gi... - gi\|110807058\|ref\|YP_690578.1\| hypothetical protein SFV_3222 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|238862109, gi... - gi\|238902294\|ref\|YP_002928090.1\| putative ABC-type organic solvent transporter [Escherichia coli BW2... gi\|251786462, gi... - gi\|251786462\|ref\|YP_003000766.1\| hypothetical protein B21_03008 [Escherichia coli BL21], gi\|24237873... gi\|254289884, gi... - gi\|254289884\|ref\|YP_003055632.1\| predicted ABC-type organic solvent transporter [Escherichia coli BL... gi\|192927018, gi... - gi\|75256568\|ref\|ZP_00728198.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|226839981, gi... - gi\|254038357\|ref\|ZP_04872415.1\| toluene tolerance protein Ttg2D [Escherichia sp. 1_1_43], gi\|2268399... gi\|188489418, gi... - gi\|75511905\|ref\|ZP_00734517.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|253975035, gi... - gi\|254163134\|ref\|YP_003046242.1\| predicted ABC-type organic solvent transporter [Escherichia coli B ... gi\|75209635, gi\|... - gi\|75209635\|ref\|ZP_00709847.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|191168638, gi... - gi\|75228153\|ref\|ZP_00714818.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|89109955, gi\|... - gi\|89109955\|ref\|AP_003735.1\| predicted ABC-type organic solvent transporter [Escherichia coli str. K... gi\|74313729, gi\|... - gi\|74313729\|ref\|YP_312148.1\| hypothetical protein SSON_3340 [Shigella sonnei Ss046], gi\|73857206\|gb\|... gi\|82545570, gi\|... - gi\|82545570\|ref\|YP_409517.1\| hypothetical protein SBO_3190 [Shigella boydii Sb227], gi\|81246981\|gb\|A... gi\|75187998, gi\|... - gi\|75187998\|ref\|ZP_00701265.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|75197141 - gi\|75197141\|ref\|ZP_00707211.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|83585430, gi\|... - gi\|83585430\|ref\|ZP_00924076.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|187429791, gi... - gi\|75176116\|ref\|ZP_00696284.1\| COG2854: ABC-type transport system involved in resistance to organic ...	6.0E-69	[1..211]	[1..211]
gi\|82778506, gi\|... - gi\|82778506\|ref\|YP_404855.1\| hypothetical protein SDY_3373 [Shigella dysenteriae Sd197], gi\|81242654... gi\|13363544, gi\|... - gi\|15833325\|ref\|NP_312098.1\| hypothetical protein ECs4071 [Escherichia coli O157:H7], gi\|13363544\|db... gi\|209758120, gi... - pir\|\|B85983 hypothetical protein yrbC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15803732, gi\|... - gi\|15803732\|ref\|NP_289766.1\| hypothetical protein Z4555 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|13363544, gi\|... - gi\|15833325\|ref\|NP_312098.1\| hypothetical protein ECs4071 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110345024, gi... - gi\|110643432\|ref\|YP_671162.1\| hypothetical protein ECP_3279 [Escherichia coli 536], gi\|110345024\|gb\|... gi\|170682535, gi... - gi\|170682535\|ref\|YP_001745464.1\| toluene tolerance protein Ttg2D [Escherichia coli SMS-3-5], gi\|1705... gi\|191174484, gi... - gi\|191174484\|ref\|ZP_03035984.1\| toluene tolerance protein Ttg2D [Escherichia coli F11], gi\|190905239... gi\|195940048 - gi\|195940048\|ref\|ZP_03085430.1\| hypothetical protein EscherichcoliO157_27255 [Escherichia coli O157:... gi\|208806604, gi... - gi\|208806604\|ref\|ZP_03248941.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC420... gi\|168777247, gi... - gi\|187767459\|gb\|EDU31303.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4196], ... gi\|189001078, gi... - gi\|189001078\|gb\|EDU70064.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4076], ... gi\|189373828, gi... - gi\|189373828\|gb\|EDU92244.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC869], g... gi\|168800906, gi... - gi\|189376815\|gb\|EDU95231.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC508], g... gi\|168751598, gi... - gi\|188014387\|gb\|EDU52509.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4113], ... gi\|189358716, gi... - gi\|189358716\|gb\|EDU77135.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4401], ... gi\|189366136, gi... - gi\|189366136\|gb\|EDU84552.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4501], ... gi\|189361738, gi... - gi\|189361738\|gb\|EDU80157.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4486], ... gi\|217326785, gi... - gi\|217326785\|ref\|ZP_03442868.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. TW145... gi\|218691482, gi... - gi\|218691482\|ref\|YP_002399694.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|218701961, gi... - gi\|218701961\|ref\|YP_002409590.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|218706812, gi... - gi\|218706812\|ref\|YP_002414331.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|208812149, gi... - gi\|208812149\|ref\|ZP_03253478.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC404... gi\|208741508, gi... - gi\|208821385\|ref\|ZP_03261705.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC404... gi\|209158090, gi... - gi\|209396690\|ref\|YP_002272662.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC41... gi\|215488508, gi... - gi\|215488508\|ref\|YP_002330939.1\| predicted ABC-type organic solvent transporter [Escherichia coli O1... gi\|254795141, gi... - gi\|254795141\|ref\|YP_003079978.1\| predicted ABC-type organic solvent transporter [Escherichia coli O1...	1.0E-68	[1..211]	[1..211]
gi\|227835309, gi... - gi\|227887913\|ref\|ZP_04005718.1\| ABC superfamily ATP binding cassette transporter, binding protein [E... gi\|26249778, gi\|... - gi\|26249778\|ref\|NP_755818.1\| hypothetical protein c3952 [Escherichia coli CFT073], gi\|26110206\|gb\|AA...	3.0E-68	[1..211]	[1..211]
gi\|237706056, gi... - gi\|237706056\|ref\|ZP_04536537.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218560262, gi... - gi\|218560262\|ref\|YP_002393175.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|91212617, gi\|... - gi\|91212617\|ref\|YP_542603.1\| hypothetical protein UTI89_C3628 [Escherichia coli UTI89], gi\|91074191\|... gi\|115514608, gi... - gi\|117625484\|ref\|YP_858807.1\| hypothetical protein APECO1_3243 [Escherichia coli APEC O1], gi\|115514...	6.0E-68	[1..211]	[1..211]
gi\|37527883, gi\|... - gi\|37527883\|ref\|NP_931228.1\| hypothetical protein plu4031 [Photorhabdus luminescens subsp. laumondii...	4.0E-67	[1..211]	[1..209]
gi\|75234894 - gi\|75234894\|ref\|ZP_00719185.1\| COG2854: ABC-type transport system involved in resistance to organic ...	4.0E-66	[6..211]	[1..206]
gi\|75236227 - gi\|75236227\|ref\|ZP_00720337.1\| COG2854: ABC-type transport system involved in resistance to organic ...	7.0E-66	[6..211]	[1..206]
gi\|50119258, gi\|... - gi\|50119258\|ref\|YP_048425.1\| hypothetical protein ECA0298 [Pectobacterium atrosepticum SCRI1043], gi...	4.0E-65	[1..211]	[1..209]
gi\|153949643, gi... - gi\|77630516\|ref\|ZP_00793102.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|229705815, gi... - gi\|229836872\|ref\|ZP_04457037.1\| predicted ABC-type organic solvent transporter [Yersinia pestis Pest... gi\|229839228, gi... - gi\|229839228\|ref\|ZP_04459387.1\| predicted ABC-type organic solvent transporter [Yersinia pestis biov... gi\|229687285, gi... - gi\|229899793\|ref\|ZP_04514934.1\| predicted ABC-type organic solvent transporter [Yersinia pestis biov... gi\|165919917, gi... - gi\|165928143\|ref\|ZP_02223975.1\| toluene tolerance protein Ttg2D [Yersinia pestis biovar Orientalis s... gi\|165914562, gi... - gi\|89102354\|ref\|ZP_01174994.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|108809722, gi... - gi\|108809722\|ref\|YP_653638.1\| hypothetical protein YPA_3731 [Yersinia pestis Antiqua], gi\|108781635\|... gi\|153997347, gi... - gi\|153997347\|ref\|ZP_02022447.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149288984\|... gi\|145597641, gi... - gi\|145597641\|ref\|YP_001161717.1\| hypothetical protein YPDSF_0325 [Yersinia pestis Pestoides F], gi\|1... gi\|162353766, gi... - gi\|77635682\|ref\|ZP_00797763.1\| COG2854: ABC-type transport system involved in resistance to organic ... gi\|229678226, gi... - gi\|229904108\|ref\|ZP_04519219.1\| predicted ABC-type organic solvent transporter [Yersinia pestis Nepa... gi\|166211863, gi... - gi\|166211863\|ref\|ZP_02237898.1\| toluene tolerance protein Ttg2D [Yersinia pestis biovar Antiqua str.... gi\|165989686, gi... - gi\|166011302\|ref\|ZP_02232200.1\| toluene tolerance protein Ttg2D [Yersinia pestis biovar Antiqua str.... gi\|25302777 - pir\|\|AE0434 probable exported protein YPO3572 [imported] - Yersinia pestis (strain CO92) gi\|167420664, gi... - gi\|167420664\|ref\|ZP_02312417.1\| toluene tolerance protein Ttg2D [Yersinia pestis biovar Orientalis s... gi\|167049921, gi... - gi\|167400553\|ref\|ZP_02306062.1\| toluene tolerance protein Ttg2D [Yersinia pestis biovar Antiqua str.... gi\|45443558, gi\|... - gi\|45443558\|ref\|NP_995097.1\| hypothetical protein YP_3827 [Yersinia pestis biovar Microtus str. 9100... gi\|167470184 - gi\|167470184\|ref\|ZP_02334888.1\| toluene tolerance protein Ttg2D [Yersinia pestis FV-1] gi\|22124063, gi\|... - gi\|22124063\|ref\|NP_667486.1\| hypothetical protein y0143 [Yersinia pestis KIM], gi\|21956810\|gb\|AAM837... gi\|167426971, gi... - gi\|167426971\|ref\|ZP_02318724.1\| toluene tolerance protein Ttg2D [Yersinia pestis biovar Mediaevalis ... gi\|16123716, gi\|... - gi\|218930584\|ref\|YP_002348459.1\| hypothetical protein YPO3572 [Yersinia pestis CO92], gi\|16123716\|re... gi\|186700026, gi... - gi\|186897000\|ref\|YP_001874112.1\| toluene tolerance family protein [Yersinia pseudotuberculosis PB1/+... gi\|51591090, gi\|... - gi\|51597808\|ref\|YP_071999.1\| hypothetical protein YPTB3516 [Yersinia pseudotuberculosis IP 32953], g... gi\|169749300, gi... - gi\|170022766\|ref\|YP_001719271.1\| toluene tolerance family protein [Yersinia pseudotuberculosis YPIII... Q665K1\|Q665K1_YERPS - Conserved putative exported protein precursor - Yersinia pseudotuberculosis	5.0E-65	[1..209]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRLMMVAL LVIAPLSAAT AADQSNPYKL MNEAAQKTFD RLKNEQPKIR ANPDYLRDVV  60
   61 DQELLPYVQV KYAGALVLGR YYKEATPAQR EAYFAAFREY LKQAYGQALA MYHGQTYQIA 120
  121 PEQPLGDATI VPIRVTIIDP NGRPPVRLDF QWRKNTQTGN WQAYDMIAEG VSMITTKQNE 180
  181 WSDLLRTKGI DGLTAQLKSI SQQKITLDEK Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	2qguA
Description:	No description for 2qguA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits