YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213425528
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	526 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425528.

Description	E-value	Query Range	Subject Range
gi\|16420653, gi\|... - gi\|16765449\|ref\|NP_461064.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164206... gi\|161613199, gi... - gi\|161613199\|ref\|YP_001587164.1\| hypothetical protein SPAB_00909 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yegH] [protein=putative inner membrane protein] [protein_id=YP_005238156.1] [location=2254878.... gi\|238912548 - gi\|238912548\|ref\|ZP_04656385.1\| hypothetical protein SentesTe_15647 [Salmonella enterica subsp. ente...	0.0	[1..526]	[1..526]
gi\|62180691, gi\|... - gi\|62180691\|ref\|YP_217108.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se...	0.0	[1..526]	[1..526]
gi\|56127237, gi\|... - gi\|56412980\|ref\|YP_150055.1\| hypothetical protein SPA0747 [Salmonella enterica subsp. enterica serov... gi\|197361909, gi... - gi\|197361909\|ref\|YP_002141546.1\| hypothetical protein SSPA0704 [Salmonella enterica subsp. enterica ...	0.0	[1..523]	[1..519]
gi\|77959272, gi\|... - gi\|77959272\|ref\|ZP_00823293.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	0.0	[1..526]	[1..528]
gi\|238795767, gi... - gi\|77962470\|ref\|ZP_00826290.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	0.0	[1..526]	[1..528]
gi\|75196117 - gi\|75196117\|ref\|ZP_00706187.1\| COG1253: Hemolysins and related proteins containing CBS domains [Esch...	0.0	[1..526]	[16..542]
gi\|238727243, gi... - gi\|77978858\|ref\|ZP_00834282.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	0.0	[1..526]	[1..528]
gi\|77975892 - gi\|77975892\|ref\|ZP_00831426.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	0.0	[1..526]	[1..528]
gi\|110642273, gi... - gi\|110642273\|ref\|YP_670003.1\| hypothetical protein ECP_2103 [Escherichia coli 536], gi\|110343865\|gb\|... gi\|75242885, gi\|... - gi\|75242885\|ref\|ZP_00726591.1\| COG1253: Hemolysins and related proteins containing CBS domains [Esch...	1.0E-98	[1..526]	[1..527]
gi\|168986388 - gi\|168986388\|dbj\|BAG11927.1\| fused predicted membrane protein/predicted membrane protein [Escherichi... gi\|218705596, gi... - gi\|218705596\|ref\|YP_002413115.1\| fused putative membrane protein ; putative membrane protein [Escher... gi\|30063512, gi\|... - gi\|30063512\|ref\|NP_837683.1\| putative transport protein [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|85675206, gi\|... - gi\|89108883\|ref\|AP_002663.1\| fused predicted membrane proteins [Escherichia coli str. K-12 substr. W... gi\|193062843, gi... - gi\|75259201\|ref\|ZP_00730549.1\| COG1253: Hemolysins and related proteins containing CBS domains [Esch... gi\|191168858, gi... - gi\|75227912\|ref\|ZP_00714616.1\| COG1253: Hemolysins and related proteins containing CBS domains [Esch... gi\|170081693, gi... - gi\|170081693\|ref\|YP_001731013.1\| fused membrane protein; membrane protein [Escherichia coli str. K-1... gi\|238861225, gi... - gi\|238901253\|ref\|YP_002927049.1\| fused putative membrane protein/putative membrane protein [Escheric... gi\|170019610, gi... - gi\|170019610\|ref\|YP_001724564.1\| integral membrane protein TerC [Escherichia coli ATCC 8739], gi\|169... gi\|218357019, gi... - gi\|218549478\|ref\|YP_002383269.1\| fused putative membrane protein ; putative membrane protein [Escher... gi\|215265358, gi... - gi\|215487286\|ref\|YP_002329717.1\| fused predicted membrane protein/predicted membrane protein [Escher... gi\|218369331, gi... - gi\|218699345\|ref\|YP_002406974.1\| fused putative membrane protein ; putative membrane protein [Escher... gi\|218365711, gi... - gi\|218558942\|ref\|YP_002391855.1\| fused putative membrane protein ; putative membrane protein [Escher... EG14051 - inner membrane protein / Inner membrane protein, function unknown EG14051 - inner membrane protein / Inner membrane protein, function unknown gi\|124528696, gi... - gi\|124528696\|ref\|ZP_01699954.1\| Integral membrane protein TerC [Escherichia coli B], gi\|124500383\|gb... YEGH_ECOLI - UPF0053 protein yegH - Escherichia coli	1.0E-98	[1..526]	[1..527]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIADPSIW AGLVTLIVIE LVLGIDNLVF IAILAEKLPP GQRDRARITG LILAMIMRLL  60
   61 LLASISWLVT LTKPLFSVQA LSFSARDLIM LFGGFFLLFK ATMELNERLE GKDSANPTQR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.552842
Match:	PF03741.7
Description:	No description for PF03741.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGAKFWAVVA QIVVLDAIFS LDSVITAVGM VDHLAVMMAA VIIAISLMLL ASKSLTRFVN  60
   61 NHPTIVILCL SFLLMIGFSL VAEGFGFHIP KGYLYAAIGF SVMIEALNQL AIFNRRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [238-526]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLSANHTLRQ RTTEAVMRLI SGKKEDAELD AETAAMLADH DDSQIFNPQE RRMIERVLNL  60
   61 NQRTVSSIMT SRHDIEHIDL NAPEAEIRAL LEKNQHTRLV VTGENEQEDL LGVVHVIDLL 120
  121 QQSLRGEPLN LRALIRQPLV FPETLPLLPA LEQFRNARTH FAFVVDEFGS VEGIVTLSDV 180
  181 METIAGNLPN EVEEIDARHD IQKNPDSSWT ANGHMPLEDL VQYVPLPLDE KREYHTIAGL 240
  241 LMEYLQRIPQ TGEEVQVGDY LLKTLQVESH RVQKVQLIPL HNGEPDQEM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits