YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213855432
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213855432.

Description	E-value	Query Range	Subject Range
gi\|194459155, gi... - gi\|194472791\|ref\|ZP_03078775.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica s... gi\|168465631, gi... - gi\|195631981\|gb\|EDX50501.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica serov... gi\|205334013, gi... - gi\|205334013\|gb\|EDZ20777.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica serov... gi\|56128577, gi\|... - gi\|56414320\|ref\|YP_151395.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|197363240, gi... - gi\|197363240\|ref\|YP_002142877.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica ...	0.0	[1..349]	[1..349]
gi\|200390772, gi... - gi\|200390772\|ref\|ZP_03217383.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=allD] [protein=ureidoglycolate dehydrogenase] [protein_id=YP_005236231.1] [location=complement... gi\|205330860, gi... - gi\|205330860\|gb\|EDZ17624.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica serov... gi\|197938552, gi... - gi\|198244036\|ref\|YP_002214483.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica ... gi\|16763908, gi\|... - gi\|16763908\|ref\|NP_459523.1\| ureidoglycolate dehydrogenase [Salmonella typhimurium LT2], gi\|16419038...	0.0	[1..349]	[1..349]
MDH_PYRAB - Malate dehydrogenase OS=Pyrococcus abyssi GN=mdh PE=3 SV=1 MDH_PYRAB - Malate dehydrogenase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=mdh PE=3 SV=1	0.0	[1..344]	[12..361]
gi\|62126770, gi\|... - gi\|62179137\|ref\|YP_215554.1\| ureidoglycolate dehydrogenase [Salmonella enterica subsp. enterica sero...	0.0	[1..349]	[1..349]
MDH_PYRHO - Malate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 1001... MDH_PYRHO - Malate dehydrogenase OS=Pyrococcus horikoshii GN=mdh PE=1 SV=1	0.0	[1..343]	[12..360]
gi\|238899799, gi... - gi\|238899799\|ref\|YP_002925595.1\| ureidoglycolate dehydrogenase [Escherichia coli BW2952], gi\|2388637... ALLD_ECOLI - Ureidoglycolate dehydrogenase (EC 1.1.1.154) - Escherichia coli EG13624 - ureidoglycolate dehydrogenase / Ureidoglycolate dehydrogenase: allantoin for anaerobic nitrogen gi\|85674655, gi\|... - gi\|89107385\|ref\|AP_001165.1\| ureidoglycolate dehydrogenase [Escherichia coli str. K-12 substr. W3110... EG13624 - ureidoglycolate dehydrogenase / Ureidoglycolate dehydrogenase: allantoin for anaerobic nitrogen gi\|75514635, gi\|... - gi\|75514635\|ref\|ZP_00736890.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli 53638], gi... gi\|170080100, gi... - gi\|170080100\|ref\|YP_001729420.1\| ureidoglycolate dehydrogenase [Escherichia coli str. K-12 substr. D...	0.0	[1..349]	[1..349]
gi\|75257843, gi\|... - gi\|75257843\|ref\|ZP_00729321.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli E22], gi\|1... gi\|190901859, gi... - gi\|75228709\|ref\|ZP_00715326.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli B7A], gi\|1... gi\|75209179, gi\|... - gi\|75209179\|ref\|ZP_00709430.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli B171], gi\|...	0.0	[1..349]	[1..349]
gi\|170021102, gi... - gi\|170021102\|ref\|YP_001726056.1\| ureidoglycolate dehydrogenase [Escherichia coli ATCC 8739], gi\|1697... gi\|124529328, gi... - gi\|124529328\|ref\|ZP_01700362.1\| Ureidoglycolate dehydrogenase [Escherichia coli B], gi\|124499928\|gb\|... gi\|75194730, gi\|... - gi\|75194730\|ref\|ZP_00704800.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli HS], gi\|15...	0.0	[1..349]	[1..349]
gi\|209777962, gi... - pir\|\|F85551 malate dehydrogenase (EC 1.1.1.37) probable [imported] - Escherichia coli (strain O157:H... ALLD_ECO57 - Ureidoglycolate dehydrogenase (NAD(+)) OS=Escherichia coli O157:H7 GN=allD PE=3 SV=1 gi\|15800254, gi\|... - gi\|15800254\|ref\|NP_286266.1\| putative malate dehydrogenase [Escherichia coli O157:H7 EDL933], gi\|125... gi\|254591105, gi... - gi\|254791705\|ref\|YP_003076542.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. TW1435... gi\|208815790, gi... - gi\|208815790\|ref\|ZP_03256969.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4045]... gi\|208727026, gi... - gi\|208807225\|ref\|ZP_03249562.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4206]... gi\|195936084 - gi\|195936084\|ref\|ZP_03081466.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4024] gi\|189379335, gi... - gi\|189379335\|gb\|EDU97751.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC508], gi\|... gi\|217325883, gi... - gi\|217325883\|ref\|ZP_03441967.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. TW14588... gi\|209160312, gi... - gi\|209398912\|ref\|YP_002269170.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4115... gi\|15829833, gi\|... - gi\|15829833\|ref\|NP_308606.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. Sakai], gi... gi\|208737086, gi... - gi\|208822893\|ref\|ZP_03263211.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4042]... gi\|189369037, gi... - gi\|189369037\|gb\|EDU87453.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4501], gi... gi\|189358084, gi... - gi\|189358084\|gb\|EDU76503.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4401], gi... gi\|168747799, gi... - gi\|188017579\|gb\|EDU55701.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4113], gi... gi\|168786378, gi... - gi\|189373624\|gb\|EDU92040.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC869], gi\|... gi\|168779020, gi... - gi\|189003045\|gb\|EDU72031.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4076], gi... gi\|187769733, gi... - gi\|187769733\|gb\|EDU33577.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4196], gi... gi\|168768480, gi... - gi\|189362376\|gb\|EDU80795.1\| ureidoglycolate dehydrogenase [Escherichia coli O157:H7 str. EC4486], gi...	0.0	[1..349]	[1..349]
gi\|209917733, gi... - gi\|209917733\|ref\|YP_002291817.1\| ureidoglycolate dehydrogenase [Escherichia coli SE11], gi\|209910992... gi\|192959069, gi... - gi\|75238992\|ref\|ZP_00722974.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli E110019], ... gi\|157080616, gi... - gi\|75189580\|ref\|ZP_00702847.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli E24377A], ...	0.0	[1..349]	[1..349]

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Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISRETLHQ LIENKLYKAG LKREHAAIVA DVLVYADARG IHSHGAVRVE YYAERISKGG  60
   61 TNREPTFRIE NTGPCTAILH ADNAAGQVAA KMGMEHAIEI AKKNGVAVVG ISRMGHSGAI 120
  121 SYFVRQAARE GLIGLSICQS DPMVVPFGGA DIYYGTNPLA FAAPSEGDDI ITFDMATTVQ 180
  181 AWGKVLDARS RNESIPESWA VDKNGAPTHD PFAVNALLPA AGPKGYGLMM MIDILSGILL 240
  241 GLPFGRQVSS MYEDLHAGRN LGQLHLVINP AFFSSCELFR KHISQTMQEL NSVKPAPGFK 300
  301 QVYYPGQDQD IKQKNADMNG IDIVDDIYQY LISDALYLKS YETKNPFAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	1xrhA
Description:	Crystal Structure of Ureidoglycolate Dehydrogenase from Escherichia Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ureidoglycolate dehydrogenase activity	2.31296605024948	bayes_pls_golite062009
catalytic activity	1.46550169341481	bayes_pls_golite062009
oxidoreductase activity	0.85331060838129	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.39638635836583	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.0391859309886404	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: