YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168269826
Organism:	synthetic construct
Length:	529 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168269826.

Description	E-value	Query Range	Subject Range
gi\|7243077 - gi\|7243077\|dbj\|BAA92586.1\| KIAA1348 protein [Homo sapiens]	0.0	[1..529]	[17..545]
gi\|114663021, gi... - gi\|114663023\|ref\|XP_001159749.1\| PREDICTED: pyruvate dehydrogenase phosphatase isoenzyme 2 isoform 3...	0.0	[1..529]	[1..529]
gi\|109128838, gi... - gi\|109128838\|ref\|XP_001085932.1\| PREDICTED: pyruvate dehydrogenase phosphatase isoenzyme 2 isoform 3...	0.0	[1..529]	[1..529]
gi\|197099506 - gi\|197099506\|ref\|NP_001125771.1\| pyruvate dehydrogenase phosphatase isoenzyme 2 [Pongo abelii] gi\|55729131 - gi\|55729131\|emb\|CAH91302.1\| hypothetical protein [Pongo abelii]	0.0	[1..529]	[1..529]
gi\|47939194, gi\|... - gi\|48675865\|ref\|NP_659559.2\| pyruvate dehydrogenase phosphatase isoenzyme 2 [Rattus norvegicus], gi\|...	0.0	[1..529]	[1..530]
gi\|60360396 - gi\|60360396\|dbj\|BAD90442.1\| mKIAA1348 protein [Mus musculus]	0.0	[1..529]	[8..539]
gi\|73957539 - gi\|73957539\|ref\|XP_546891.2\| PREDICTED: similar to [Pyruvate dehydrogenase [Lipoamide]]-phosphatase ...	0.0	[1..529]	[1..531]
gi\|76640722 - gi\|76640722\|ref\|XP_585995.2\| PREDICTED: similar to [Pyruvate dehydrogenase [Lipoamide]]-phosphatase ...	0.0	[1..528]	[34..563]

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Predicted Domain #1

Region A:
Residues: [1-529]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTVSYWIL NSTRNSIATL QGGRRLYSRY VSNRNKLKWR LFSRVPPTLN SSPCGGFTLC  60
   61 KAYRHTSTEE DDFHLQLSPE QINEVLRAGE TTHKILDLES RVPNSVLRFE SNQLAANSPV 120
  121 EDRRGVASCL QTNGLMFGIF DGHGGHACAQ AVSERLFYYV AVSLMSHQTL EHMEGAMESM 180
  181 KPLLPILHWL KHPGDSIYKD VTSVHLDHLR VYWQELLDLH MEMGLSIEEA LMYSFQRLDS 240
  241 DISLEIQAPL EDEVTRNLSL QVAFSGATAC MAHVDGIHLH VANAGDCRAI LGVQEDNGMW 300
  301 SCLPLTRDHN AWNQAELSRL KREHPESEDR TIIMEDRLLG VLIPCRAFGD VQLKWSKELQ 360
  361 RSILERGFNT EALNIYQFTP PHYYTPPYLT AEPEVTYHRL RPQDKFLVLA SDGLWDMLSN 420
  421 EDVVRLVVGH LAEADWHKTD LAQRPANLGL MQSLLLQRKA SGLHEADQNA ATRLIRHAIG 480
  481 NNEYGEMEAE RLAAMLTLPE DLARMYRDDI TVTVVYFNSE SIGAYYKGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.154902
Match:	2pnqA
Description:	No description for 2pnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits