YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168235305, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168235305, gi....

Description	E-value	Query Range	Subject Range
gi\|226902644, gi... - gi\|237703380\|ref\|ZP_04533861.1\| preprotein translocase subunit SecB [Escherichia sp. 3_2_53FAA], gi\|... gi\|91213124, gi\|... - gi\|91213124\|ref\|YP_543110.1\| preprotein translocase subunit SecB [Escherichia coli UTI89], gi\|910746... gi\|115515011, gi... - gi\|117625887\|ref\|YP_859210.1\| preprotein translocase subunit SecB [Escherichia coli APEC O1], gi\|115...	4.0E-69	[1..155]	[21..175]
gi\|26110683, gi\|... - gi\|26250254\|ref\|NP_756294.1\| export protein SecB [Escherichia coli CFT073], gi\|26110683\|gb\|AAN82868....	5.0E-69	[1..155]	[21..175]
SECB_ECOUT - Protein-export protein SecB OS=Escherichia coli (strain UTI89 / UPEC) GN=secB PE=3 SV=2 SECB_ECOLC - Protein-export protein SecB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=secB PE=3 ... SECB_ECOK1 - Protein-export protein SecB OS=Escherichia coli O1:K1 / APEC GN=secB PE=3 SV=2 SECB_ECO45 - Protein-export protein SecB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=secB PE=3 SV=1 SECB_ECO81 - Protein-export protein SecB OS=Escherichia coli O81 (strain ED1a) GN=secB PE=3 SV=1 SECB_ECOSE - Protein-export protein SecB OS=Escherichia coli (strain SE11) GN=secB PE=3 SV=1 SECB_ECO27 - Protein-export protein SecB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=secB PE=3 SV=1 gi\|124499157, gi... - gi\|124530516\|ref\|ZP_01701143.1\| protein-export protein SecB [Escherichia coli B], gi\|124499157\|gb\|EA... SECB_ECOL5 - Protein-export protein SecB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=secB PE=3 SV=1 gi\|170124363, gi... - gi\|170766925\|ref\|ZP_02901378.1\| protein-export chaperone SecB [Escherichia albertii TW07627], gi\|170... gi\|194420748, gi... - gi\|83571402\|ref\|ZP_00922842.1\| COG1952: Preprotein translocase subunit SecB [Shigella dysenteriae 10... gi\|190909305, gi... - gi\|75242605\|ref\|ZP_00726349.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli F11], ... sp\|B7ULG5\|SECB_ECO27 - Protein-export protein secB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=secB PE=3 SV=1 gi\|188493596, gi... - gi\|75514322\|ref\|ZP_00736630.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli 53638]... SECB_SHIDS - Protein-export protein SecB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=secB PE=3 SV=1	2.0E-67	[1..155]	[1..155]
SECB_SHISS - Protein-export protein SecB OS=Shigella sonnei (strain Ss046) GN=secB PE=3 SV=1	2.0E-67	[1..155]	[1..155]
SECB_ECO7I - Protein-export protein SecB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=secB PE=3 SV=1 SECB_ECO55 - Protein-export protein SecB OS=Escherichia coli (strain 55989 / EAEC) GN=secB PE=3 SV=1 SECB_ECOLU - Protein-export protein SecB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=secB PE=3 SV=... EG10937 - protein export chaperone / Protein export chaperone; SecB helps SecA deliver proteins to the SecYEG ... gi\|195935138 - gi\|195935138\|ref\|ZP_03080520.1\| preprotein translocase subunit SecB [Escherichia coli O157:H7 str. E... SECB_ECOSM - Protein-export protein SecB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=secB PE=3 SV=1 gi\|208812964, gi... - gi\|208812964\|ref\|ZP_03254293.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4045]... gi\|208726112, gi... - gi\|208806311\|ref\|ZP_03248648.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4206]... SECB_ECO5E - Protein-export protein SecB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=secB PE=3 SV=1 gi\|208821436, gi... - gi\|208821436\|ref\|ZP_03261756.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4042]... SECB_ECO8A - Protein-export protein SecB OS=Escherichia coli O8 (strain IAI1) GN=secB PE=3 SV=1 gi\|217325062, gi... - gi\|217325062\|ref\|ZP_03441146.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. TW14588... gi\|30065115, gi\|... - gi\|30065115\|ref\|NP_839286.1\| preprotein translocase subunit SecB [Shigella flexneri 2a str. 2457T], ... SECB_ECO57 - Protein-export protein SecB OS=Escherichia coli O157:H7 GN=secB PE=3 SV=1 EG10937 - protein export chaperone / Protein export chaperone; SecB helps SecA deliver proteins to the SecYEG ... gi\|12518359, gi\|... - gi\|15804153\|ref\|NP_290192.1\| preprotein translocase subunit SecB [Escherichia coli O157:H7 EDL933], ... SECB_ECOL6 - Protein-export protein secB OS=Escherichia coli O6 GN=secB PE=3 SV=1 gi\|75211366, gi\|... - gi\|75211366\|ref\|ZP_00711465.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli B171],... gi\|168759707, gi... - gi\|189369499\|gb\|EDU87915.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4501], gi... gi\|75228674, gi\|... - gi\|75228674\|ref\|ZP_00715295.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli B7A], ... gi\|168753433, gi... - gi\|189358898\|gb\|EDU77317.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4401], gi... gi\|193068468, gi... - gi\|75237551\|ref\|ZP_00721584.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli E11001... gi\|187771408, gi... - gi\|187771408\|gb\|EDU35252.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4196], gi... gi\|193066097, gi... - gi\|75255827\|ref\|ZP_00727573.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli E22], ... gi\|168766029, gi... - gi\|189364434\|gb\|EDU82853.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4486], gi... SECB_SHIBS - Protein-export protein SecB OS=Shigella boydii serotype 4 (strain Sb227) GN=secB PE=3 SV=1 gi\|189374662, gi... - gi\|189374662\|gb\|EDU93078.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC869], gi\|... gi\|89110402, gi\|... - gi\|89110402\|ref\|AP_004182.1\| protein export chaperone [Escherichia coli str. K-12 substr. W3110], gi... gi\|168779765, gi... - gi\|189002419\|gb\|EDU71405.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4076], gi... gi\|56792957 - gi\|56792957\|gb\|AAW30661.1\| SecB [synthetic construct] SECB_ECODH - Protein-export protein SecB OS=Escherichia coli (strain K12 / DH10B) GN=secB PE=3 SV=1 gi\|168797453, gi... - gi\|189379991\|gb\|EDU98407.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC508], gi\|... gi\|83588537, gi\|... - gi\|83588537\|ref\|ZP_00927161.1\| COG1952: Preprotein translocase subunit SecB [Escherichia coli 101-1]... SECB_SHIB3 - Protein-export protein SecB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=secB PE=3... SECB_ECO24 - Protein-export protein SecB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=secB PE=3 SV=1 gi\|168746841, gi... - gi\|188018484\|gb\|EDU56606.1\| protein-export chaperone SecB [Escherichia coli O157:H7 str. EC4113], gi... SECB_ECOHS - Protein-export protein SecB OS=Escherichia coli O9:H4 (strain HS) GN=secB PE=3 SV=1 SECB_ECOL6 - Protein-export protein SecB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=secB P... SECB_SHIF8 - Protein-export protein SecB OS=Shigella flexneri serotype 5b (strain 8401) GN=secB PE=3 SV=1 gi\|15833741, gi\|... - gi\|15833741\|ref\|NP_312514.1\| preprotein translocase subunit SecB [Escherichia coli O157:H7 str. Saka... SECB_ECOLI - Protein-export protein secB - Escherichia coli SECB_SHIFL - Protein-export protein SecB OS=Shigella flexneri GN=secB PE=3 SV=1 gi\|24114878, gi\|... - gi\|24114878\|ref\|NP_709388.1\| preprotein translocase subunit SecB [Shigella flexneri 2a str. 301], gi... gi\|227839057, gi... - gi\|227883779\|ref\|ZP_04001584.1\| preprotein translocase subunit SecB [Escherichia coli 83972], gi\|227... SECB_ECOBW - Protein-export protein SecB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=secB PE=3 SV=1 gi\|251786860, gi... - gi\|251786860\|ref\|YP_003001164.1\| hypothetical protein B21_03418 [Escherichia coli BL21], gi\|24237913... gi\|253771548, gi... - gi\|254290289\|ref\|YP_003056037.1\| export protein SecB [Escherichia coli BL21(DE3)], gi\|253979596\|gb\|A... gi\|254038809, gi... - gi\|254038809\|ref\|ZP_04872861.1\| export secB [Escherichia sp. 1_1_43], gi\|226838774\|gb\|EEH70801.1\| ex... gi\|253975440, gi... - gi\|254163539\|ref\|YP_003046647.1\| export protein SecB [Escherichia coli B str. REL606], gi\|253975440\|... gi\|254594967, gi... - gi\|254795567\|ref\|YP_003080404.1\| protein export chaperone [Escherichia coli O157:H7 str. TW14359], g...	2.0E-67	[1..155]	[1..155]
gi\|40889477, gi\|... - gi\|40889480\|pdb\|1QYN\|D Chain D, Crystal Structure Of Secb From Escherichia Coli, gi\|40889479\|pdb\|1QY...	3.0E-66	[1..153]	[1..153]
gi\|77977372 - gi\|77977372\|ref\|ZP_00832822.1\| COG1952: Preprotein translocase subunit SecB [Yersinia intermedia ATC...	2.0E-64	[1..155]	[1..156]
gi\|77958477 - gi\|77958477\|ref\|ZP_00822510.1\| COG1952: Preprotein translocase subunit SecB [Yersinia bercovieri ATC... gi\|77961959 - gi\|77961959\|ref\|ZP_00825786.1\| COG1952: Preprotein translocase subunit SecB [Yersinia mollaretii ATC... SECB_YERE8 - Protein-export protein SecB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 ...	2.0E-64	[1..155]	[1..156]
gi\|77972954 - gi\|77972954\|ref\|ZP_00828508.1\| COG1952: Preprotein translocase subunit SecB [Yersinia frederiksenii ...	8.0E-64	[1..155]	[1..158]
SECB_PECAS - Protein-export protein SecB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=secB... SECB_ERWCT - Protein-export protein secB OS=Erwinia carotovora subsp. atroseptica GN=secB PE=3 SV=1	1.0E-63	[1..155]	[1..158]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQNNTEMA FQIQRIYTKD VSFEAPNAPH VFQKDWQPEV KLDLDTASSQ LADDVYEVVL  60
   61 RVTVTASLGE ETAFLCEVQQ AGIFSISGIE GTQMAHCLGA YCPNILFPYA RECITSLVSR 120
  121 GTFPQLNLAP VNFDALFMNY LQQQAGEGTE EHQDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	1qynA
Description:	Crystal Structure of SecB from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	6.35026304666251	bayes_pls_golite062009
binding	2.83315924084513	bayes_pls_golite062009
unfolded protein binding	2.16552514584831	bayes_pls_golite062009
protein binding	1.68053363123835	bayes_pls_golite062009
transporter activity	1.14731421693772	bayes_pls_golite062009
substrate-specific transporter activity	0.747128915267314	bayes_pls_golite062009
transmembrane transporter activity	0.658797982643155	bayes_pls_golite062009
protein transmembrane transporter activity	0.1698588415231	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.123631482979072	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: