YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213028378
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213028378.

Description	E-value	Query Range	Subject Range
gi\|204927197, gi... - gi\|204927197\|ref\|ZP_03218399.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|197363382, gi... - gi\|197363382\|ref\|YP_002143019.1\| hypothetical protein SSPA2182 [Salmonella enterica subsp. enterica ... gi\|194736123, gi... - gi\|194736123\|ref\|YP_002113414.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|197289477, gi... - gi\|197289477\|gb\|EDY28840.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|56128718, gi\|... - gi\|56414461\|ref\|YP_151536.1\| hypothetical protein SPA2339 [Salmonella enterica subsp. enterica serov...	6.0E-29	[1..106]	[1..106]
gi\|124528903, gi... - gi\|124528903\|ref\|ZP_01700088.1\| PsiF repeat protein [Escherichia coli B], gi\|124500240\|gb\|EAY47716.1... EG11401 - PsiF family protein / Predicted exported protein, phosphate starvation inducible, function unknown PSIF_ECOL6 - Phosphate starvation-inducible protein psiF OS=Escherichia coli O6 GN=psiF PE=4 SV=1 gi\|110342237, gi... - gi\|110640645\|ref\|YP_668373.1\| hypothetical protein ECP_0443 [Escherichia coli 536], gi\|110342237\|gb\|... gi\|188491217, gi... - gi\|75512443\|ref\|ZP_00734982.1\| hypothetical protein Ecol5_01003358 [Escherichia coli 53638], gi\|1884... gi\|190906232, gi... - gi\|75238712\|ref\|ZP_00722700.1\| hypothetical protein EcolF_01003370 [Escherichia coli F11], gi\|191173... gi\|192958094, gi... - gi\|75237234\|ref\|ZP_00721281.1\| hypothetical protein EcolE1_01001692 [Escherichia coli E110019], gi\|1... gi\|75230110, gi\|... - gi\|75230110\|ref\|ZP_00716614.1\| hypothetical protein EcolB7_01001657 [Escherichia coli B7A], gi\|19116... gi\|157079093, gi... - gi\|75189452\|ref\|ZP_00702719.1\| hypothetical protein EcolE_01002737 [Escherichia coli E24377A], gi\|15... gi\|75176856, gi\|... - gi\|75176856\|ref\|ZP_00696972.1\| hypothetical protein SboyB_01003189 [Shigella boydii BS512], gi\|18773... PSIF_ECOLI - Phosphate starvation-inducible protein psiF precursor - Escherichia coli gi\|85674525, gi\|... - gi\|89107255\|ref\|AP_001035.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG11401 - PsiF family protein / Predicted exported protein, phosphate starvation inducible, function unknown gi\|189356030, gi... - gi\|189356030\|gb\|EDU74449.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|168761577, gi... - gi\|189367968\|gb\|EDU86384.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|254590962, gi... - gi\|254791562\|ref\|YP_003076399.1\| hypothetical protein ECSP_0446 [Escherichia coli O157:H7 str. TW143... gi\|189362415, gi... - gi\|189362415\|gb\|EDU80834.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|238860433, gi... - gi\|238899674\|ref\|YP_002925470.1\| hypothetical protein BWG_0268 [Escherichia coli BW2952], gi\|2388604... gi\|187768321, gi... - gi\|187768321\|gb\|EDU32165.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|188999371, gi... - gi\|188999371\|gb\|EDU68357.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|168786218, gi... - gi\|189373690\|gb\|EDU92106.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|168800254, gi... - gi\|189377429\|gb\|EDU95845.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|169756171, gi... - gi\|170021243\|ref\|YP_001726197.1\| hypothetical protein EcolC_3248 [Escherichia coli ATCC 8739], gi\|16... gi\|188015882, gi... - gi\|188015882\|gb\|EDU54004.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|215263538, gi... - gi\|215485466\|ref\|YP_002327897.1\| hypothetical protein E2348C_0320 [Escherichia coli O127:H6 str. E23... gi\|217326342, gi... - gi\|217326342\|ref\|ZP_03442426.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|218552947, gi... - gi\|218552947\|ref\|YP_002385860.1\| hypothetical protein ECIAI1_0383 [Escherichia coli IAI1], gi\|218359... PSIF_ECOL6 - Phosphate starvation-inducible protein PsiF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|218557294, gi... - gi\|218557294\|ref\|YP_002390207.1\| hypothetical protein ECS88_0378 [Escherichia coli S88], gi\|21836406... gi\|218425811, gi... - gi\|218688247\|ref\|YP_002396459.1\| hypothetical protein ECED1_0407 [Escherichia coli ED1a], gi\|2184258... gi\|218350577, gi... - gi\|218693845\|ref\|YP_002401512.1\| hypothetical protein EC55989_0393 [Escherichia coli 55989], gi\|2183... gi\|218698711, gi... - gi\|218698711\|ref\|YP_002406340.1\| hypothetical protein ECIAI39_0297 [Escherichia coli IAI39], gi\|2183... gi\|218430763, gi... - gi\|218703666\|ref\|YP_002411185.1\| hypothetical protein ECUMN_0422 [Escherichia coli UMN026], gi\|21843... gi\|169887806, gi... - gi\|170079971\|ref\|YP_001729291.1\| hypothetical protein ECDH10B_0341 [Escherichia coli str. K-12 subst... gi\|170680000, gi... - gi\|170680000\|ref\|YP_001742517.1\| phosphate starvation-inducible protein PsiF [Escherichia coli SMS-3... gi\|195938556 - gi\|195938556\|ref\|ZP_03083938.1\| hypothetical protein EscherichcoliO157_19357 [Escherichia coli O157:... gi\|208807988, gi... - gi\|208807988\|ref\|ZP_03250325.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|208816012, gi... - gi\|208816012\|ref\|ZP_03257191.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|208822891, gi... - gi\|208822891\|ref\|ZP_03263209.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|209159049, gi... - gi\|209397649\|ref\|YP_002269022.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:... gi\|209910855, gi... - gi\|209917596\|ref\|YP_002291680.1\| hypothetical protein ECSE_0405 [Escherichia coli SE11], gi\|20991085...	9.0E-29	[1..106]	[1..106]
gi\|83585696, gi\|... - gi\|83585696\|ref\|ZP_00924338.1\| hypothetical protein Ecol1_01003112 [Escherichia coli 101-1], gi\|1944... gi\|253325678, gi... - gi\|254287253\|ref\|YP_003053001.1\| hypothetical protein ECD_00331 [Escherichia coli BL21(DE3)], gi\|253... gi\|242376161, gi... - gi\|251783888\|ref\|YP_002998192.1\| hypothetical protein B21_00335 [Escherichia coli BL21], gi\|24237616... gi\|253972351, gi... - gi\|254160450\|ref\|YP_003043558.1\| hypothetical protein ECB_00331 [Escherichia coli B str. REL606], gi... tr\|A0A0X8UGX6\|A0... - Uncharacterized protein OS=Escherichia coli (strain K12) GN=C3026_01860 PE=4 SV=1	1.0E-28	[1..106]	[1..106]
gi\|227838698, gi... - gi\|227884612\|ref\|ZP_04002417.1\| phosphate starvation-inducible protein PsiF [Escherichia coli 83972]... gi\|237707627, gi... - gi\|237707627\|ref\|ZP_04538108.1\| phosphate starvation-induced protein psiF [Escherichia sp. 3_2_53FAA... gi\|91071023, gi\|... - gi\|91209449\|ref\|YP_539435.1\| hypothetical protein UTI89_C0403 [Escherichia coli UTI89], gi\|91071023\|... gi\|25371754, gi\|... - pir\|\|H64766 phosphate starvation-induced protein psiF precursor - Escherichia coli (strain K-12), p... gi\|15829688, gi\|... - gi\|15829688\|ref\|NP_308461.1\| phosphate starvation-induced protein [Escherichia coli O157:H7], gi\|133... gi\|15829688, gi\|... - gi\|15829688\|ref\|NP_308461.1\| hypothetical protein ECs0434 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|26106784, gi\|... - gi\|26246386\|ref\|NP_752425.1\| hypothetical protein c0491 [Escherichia coli CFT073], gi\|26106784\|gb\|AA... gi\|110804405, gi... - gi\|110804405\|ref\|YP_687925.1\| hypothetical protein SFV_0347 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|15800110, gi\|... - gi\|15800110\|ref\|NP_286122.1\| hypothetical protein Z0480 [Escherichia coli O157:H7 EDL933], gi\|125132... gi\|16128369, gi\|... - gb\|AAC73487.1\| induced by phosphate starvation [Escherichia coli K12], gi\|16128369\|ref\|NP_414918.1\|... gi\|73854428, gi\|... - gi\|74310951\|ref\|YP_309370.1\| hypothetical protein SSON_0359 [Shigella sonnei Ss046], gi\|73854428\|gb\|... gi\|117622647, gi... - gi\|117622647\|ref\|YP_851560.1\| hypothetical protein APECO1_1624 [Escherichia coli APEC O1], gi\|115511... gi\|82542875, gi\|... - gi\|82542875\|ref\|YP_406822.1\| hypothetical protein SBO_0279 [Shigella boydii Sb227], gi\|81244286\|gb\|A... gi\|1657580\|gb\|AA... - phosphate starvation-inducible protein [Escherichia coli]	1.0E-28	[1..106]	[7..112]
gi\|75256757, gi\|... - gi\|75256757\|ref\|ZP_00728362.1\| hypothetical protein EcolE2_01003330 [Escherichia coli E22], gi\|19306... gi\|75209941, gi\|... - gi\|75209941\|ref\|ZP_00710130.1\| hypothetical protein EcolB_01002885 [Escherichia coli B171], gi\|19442... gi\|157065583, gi... - gi\|75194604\|ref\|ZP_00704674.1\| hypothetical protein EcolH_01000383 [Escherichia coli HS], gi\|1571599...	3.0E-28	[1..106]	[1..106]
gi\|30040045, gi\|... - gi\|30061803\|ref\|NP_835974.1\| hypothetical protein S0251 [Shigella flexneri 2a str. 2457T], gi\|300400...	3.0E-28	[1..106]	[7..112]
gi\|24111674, gi\|... - gi\|24111674\|ref\|NP_706184.1\| hypothetical protein SF0229 [Shigella flexneri 2a str. 301], gi\|2405045...	4.0E-28	[1..106]	[7..112]
gi\|48732216, gi\|... - gi\|77456802\|ref\|YP_346307.1\| PsiF [Pseudomonas fluorescens Pf0-1], gi\|77380805\|gb\|ABA72318.1\| phosph...	6.0E-22	[1..104]	[1..100]
gi\|82775717, gi\|... - gi\|82775717\|ref\|YP_402064.1\| induced by phosphate starvation [Shigella dysenteriae Sd197], gi\|812398...	3.0E-21	[1..85]	[7..91]
gi\|83570348 - gi\|83570348\|ref\|ZP_00921793.1\| hypothetical protein Sdys1_01001314 [Shigella dysenteriae 1012]	5.0E-21	[1..85]	[1..85]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITLLVTLL FGLVFLTAVG ATEKPLTPQQ QRMTTCNQQA TAQALKGDAR KTYLSDCLKN  60
   61 SQSAPGEKSL TPQQQKMREC NVQATEQSLK GDDRSKFMSA CLKKAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.885	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits