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View Structure Prediction Details

Protein: gi|208966778
Organism: synthetic construct
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208966778.

Description E-value Query
Range
Subject
Range
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1
404.0 [0..1] [258..1]
gi|13529221 - gi|13529221|gb|AAH05373.1| Mitochondrial ribosomal protein S18B [Homo sapiens]
400.0 [0..1] [258..1]
RT18B_MACMU - 28S ribosomal protein S18b, mitochondrial OS=Macaca mulatta GN=MRPS18B PE=3 SV=1
392.0 [0..1] [258..1]
RT18B_PIG - 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B PE=1 SV=1
385.0 [0..1] [258..1]
RT18B_BOVIN - 28S ribosomal protein S18b, mitochondrial OS=Bos taurus GN=MRPS18B PE=1 SV=2
384.0 [0..1] [258..1]
gi|74188911 - gi|74188911|dbj|BAE39228.1| unnamed protein product [Mus musculus]
361.0 [0..1] [257..1]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVLNTVL RRLPMLSLFR GSHRVQVPLQ TLCTKAPSEE DSLSSVPISP YKDEPWKYLE  60
   61 SEEYQERYGS RP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VWADYRRNHK GGVPPQRTRK TCIRRNKVVG NPCPICRDHK LHVDFRNVKL LEQFVCAHTG  60
   61 IIFYAPYTGV CVKQHKRLTQ AIQKARDHGL LIYHIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.39794
Match: 1vs5R
Description: No description for 1vs5R was found.

Predicted Domain #3
Region A:
Residues: [169-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVEPRDLDFS TSHGAVSATP PAPTLVSGDP WYPWYNWKQP PERELSRLRR LYQGHLQEES  60
   61 GPPPESMPKM PPRTPAEASS TGQTGPQSAL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle