YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190405876
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405876.

Description	E-value	Query Range	Subject Range
gi\|51830279 - gi\|51830279\|gb\|AAU09708.1\| YDR348C [Saccharomyces cerevisiae]	402.0	[0..17]	[365..103]
pal1 - membrane associated protein Pal1 PAL1_SCHPO - Protein pal1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pal1 PE=1 SV=1	339.0	[0..2]	[320..15]
gi\|49524171, gi\|... - gi\|50284883\|ref\|XP_444869.1\| hypothetical protein CAGL0A02409g [Candida glabrata CBS138], gi\|4952417... gi\|49524171 - gi\|49524171\|emb\|CAG57762.1\| unnamed protein product [Candida glabrata]	247.0	[0..51]	[365..110]
gi\|49645205, gi\|... - gi\|50312075\|ref\|XP_456069.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645205\|emb\|CAG9877...	216.0	[0..11]	[365..39]
gi\|44981628 - gi\|44981628\|gb\|AAS51378.1\| ACR152Wp [Ashbya gossypii ATCC 10895] gi\|45185838, gi\|... - gi\|45185838\|ref\|NP_983554.1\| ACR152Wp [Ashbya gossypii ATCC 10895], gi\|44981628\|gb\|AAS51378.1\| ACR15...	216.0	[0..18]	[365..102]
gi\|50421357, gi\|... - gi\|50421357\|ref\|XP_459228.1\| hypothetical protein DEHA0D18535g [Debaryomyces hansenii CBS767], gi\|49...	175.0	[0..17]	[365..2]
gi\|68468351, gi\|... - gi\|68468594\|ref\|XP_721616.1\| hypothetical protein CaO19.9227 [Candida albicans SC5314], gi\|68468351\|... orf19.9227 - orf19.1658 CGDID:CAL0000043 Assembly 19, Contig19-20123 (110162, 111199) CDS, translated using codon...	134.0	[0..18]	[364..2]
gi\|49646989 - gi\|49646989\|emb\|CAG83376.1\| YALI0B20108p [Yarrowia lipolytica] gi\|49646989, gi\|... - gi\|50547307\|ref\|XP_501123.1\| YALI0B20108p [Yarrowia lipolytica], gi\|49646989\|emb\|CAG83376.1\| unnamed...	133.0	[0..61]	[365..177]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTGRTIGG PQNGVNTVIN PFRVSPSEDR VSSRDETPRN YNNPFLNEDD TRRAHNSSVS  60
   61 NSRQERLPSY EEAAGTPKQQ APYPKEKKRS SGSNSHQHNH HHHRRTSHGH RDKDKQKSKS 120
  121 RT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [123-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVKPPKNVDT IDKMDVTGLF GGSFHHDGPF DACTPQRNKN NKVAPVLAFP ADGPNNTVGG  60
   61 RTSKKSTLDE VFGRETVDDD SETLNQLQDR AYLFNKANSS TTTLDAIKPN SKNITQFDSK 120
  121 MKTELVHGPI TMGLGSTTFL DGAPASSAAI EQDVINHAQE SRRKNSIARK KSLPSR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.086186
Match:	PF08316.2
Description:	No description for PF08316.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHLQVNNNNL KLVKTHSGHL EQKDVDDNRT SVPVTATQGS GHEDVVKKEN TGNKLLRRVK  60
   61 SLKTSKKH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits