YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213648864
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213648864.

Description	E-value	Query Range	Subject Range
CSGC_SALTY - Curli assembly protein CsgC OS=Salmonella typhimurium GN=csgC PE=3 SV=1 CSGC_SALEN - Curli assembly protein CsgC OS=Salmonella enteritidis GN=csgC PE=1 SV=1 gi\|194406640, gi... - gi\|194448336\|ref\|YP_002045143.1\| putative autoagglutination protein [Salmonella enterica subsp. ente... gi\|194403108, gi... - gi\|194444445\|ref\|YP_002040398.1\| curli production protein CsgC [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=csgC] [protein=putative autoagglutination protein] [protein_id=YP_005236895.1] [location=11903... CSGC_SALTY - Curli assembly protein CsgC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=csgC ... CSGC_SALEN - Putative curli production protein csgC OS=Salmonella enteritidis GN=csgC PE=4 SV=1 gi\|205359394, gi... - gi\|205359394\|ref\|ZP_02669670.2\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|205331897, gi... - gi\|205358786\|ref\|ZP_03224138.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... CSGC_SALTY - Putative curli production protein csgC OS=Salmonella typhimurium GN=csgC PE=4 SV=1 gi\|205358039, gi... - gi\|205358039\|ref\|ZP_03223909.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|205322402, gi... - gi\|205357315\|ref\|ZP_02346823.2\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|224460418 - gi\|224460418\|ref\|YP_002633100.1\| curli production protein CsgC [Salmonella enterica subsp. enterica ... gi\|207857347, gi... - gi\|207857347\|ref\|YP_002243998.1\| putative autoagglutination protein [Salmonella enterica subsp. ente... gi\|205347308, gi... - gi\|205360736\|ref\|ZP_03224703.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|205360102, gi... - gi\|205360102\|ref\|ZP_02834581.2\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|197262541, gi... - gi\|197262541\|ref\|ZP_03162615.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|197211606, gi... - gi\|197247903\|ref\|YP_002146900.1\| curli production protein CsgC [Salmonella enterica subsp. enterica ... gi\|195630328, gi... - gi\|195874171\|ref\|ZP_02700932.2\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|194471130, gi... - gi\|194471130\|ref\|ZP_03077114.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|205353116, gi... - gi\|205353116\|ref\|YP_002226917.1\| putative autoagglutination protein [Salmonella enterica subsp. ente... gi\|204930854, gi... - gi\|204930854\|ref\|ZP_03221727.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|199601849, gi... - gi\|200389404\|ref\|ZP_03216015.1\| curli production protein CsgC [Salmonella enterica subsp. enterica s... gi\|198242117, gi... - gi\|198242117\|ref\|YP_002215993.1\| curli production protein CsgC [Salmonella enterica subsp. enterica ...	174.0	[0..1]	[108..1]
gi\|62127296, gi\|... - gi\|62179663\|ref\|YP_216080.1\| putative autoagglutination protein [Salmonella enterica subsp. enterica...	165.0	[0..5]	[108..1]
gi\|117623232, gi... - gi\|117623232\|ref\|YP_852145.1\| putative autoagglutination protein [Escherichia coli APEC O1], gi\|1155... gi\|218557924, gi... - gi\|218557924\|ref\|YP_002390837.1\| putative autoagglutination protein [Escherichia coli S88], gi\|21836... gi\|218704451, gi... - gi\|218704451\|ref\|YP_002411970.1\| putative autoagglutination protein [Escherichia coli UMN026], gi\|21...	164.0	[0..1]	[108..54]
gi\|74311598, gi\|... - gi\|74311598\|ref\|YP_310017.1\| putative autoagglutination protein [Shigella sonnei Ss046], gi\|73855075...	159.0	[0..1]	[108..1]
gi\|208726587, gi... - gi\|208806786\|ref\|ZP_03249123.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4206]... gi\|195935432 - gi\|195935432\|ref\|ZP_03080814.1\| putative autoagglutination protein [Escherichia coli O157:H7 str. EC... gi\|189378264, gi... - gi\|189378264\|gb\|EDU96680.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC508], gi\|... gi\|168789975, gi... - gi\|189370471\|gb\|EDU88887.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC869], gi\|... gi\|218370440, gi... - gi\|218700454\|ref\|YP_002408083.1\| putative autoagglutination protein [Escherichia coli IAI39], gi\|218... gi\|217328070, gi... - gi\|217328070\|ref\|ZP_03444152.1\| curli production protein CsgC [Escherichia coli O157:H7 str. TW14588... gi\|209158404, gi... - gi\|209397004\|ref\|YP_002269891.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4115... gi\|208737840, gi... - gi\|208822355\|ref\|ZP_03262674.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4042]... gi\|189358269, gi... - gi\|189358269\|gb\|EDU76688.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4401], gi... gi\|188018083, gi... - gi\|188018083\|gb\|EDU56205.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4113], gi... gi\|168783570, gi... - gi\|188999085\|gb\|EDU68071.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4076], gi... gi\|187770516, gi... - gi\|187770516\|gb\|EDU34360.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4196], gi... gi\|13360881, gi\|... - gi\|15830675\|ref\|NP_309448.1\| CsgC [Escherichia coli O157:H7], gi\|13360881\|dbj\|BAB34844.1\| putative c... gi\|189363231, gi... - gi\|189363231\|gb\|EDU81650.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4486], gi... gi\|171986616, gi... - pir\|\|A85666 probable curli production protein csgC [imported] - Escherichia coli (strain O157:H7, su... gi\|168760618, gi... - gi\|189368824\|gb\|EDU87240.1\| curli production protein CsgC [Escherichia coli O157:H7 str. EC4501], gi... gi\|12514575, gi\|... - gi\|15801160\|ref\|NP_287177.1\| putative autoagglutination protein [Escherichia coli O157:H7 EDL933], g... CSGC_ECO45 - Curli assembly protein CsgC OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=csgC PE=3 SV=2 CSGC_ECOLU - Curli assembly protein CsgC OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=csgC PE=3 SV=... gi\|237706974, gi... - gi\|237706974\|ref\|ZP_04537455.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... CSGC_ECOK1 - Curli assembly protein CsgC OS=Escherichia coli O1:K1 / APEC GN=csgC PE=3 SV=2 gi\|91210193, gi\|... - gi\|91210193\|ref\|YP_540179.1\| putative autoagglutination protein [Escherichia coli UTI89], gi\|9107176... gi\|254591827, gi... - gi\|254792427\|ref\|YP_003077264.1\| predicted curli production protein [Escherichia coli O157:H7 str. T... gi\|13360881, gi\|... - gi\|15830675\|ref\|NP_309448.1\| putative autoagglutination protein [Escherichia coli O157:H7 str. Sakai...	158.0	[0..1]	[108..1]
EG13414 - curli assembly protein / Curli assembly protein CSGC_ECOLI - Putative curli production protein csgC precursor - Escherichia coli EG13414 - curli assembly protein / Curli assembly protein gi\|238900298, gi... - gi\|238900298\|ref\|YP_002926094.1\| putative curli production protein [Escherichia coli BW2952], gi\|238... gi\|169888530, gi... - gi\|170080695\|ref\|YP_001730015.1\| curli production protein [Escherichia coli str. K-12 substr. DH10B]... gi\|89107888, gi\|... - gi\|89107888\|ref\|AP_001668.1\| predicted curli production protein [Escherichia coli str. K-12 substr. ...	158.0	[0..1]	[108..1]
gi\|56383352, gi\|... - gi\|56479801\|ref\|NP_706954.2\| putative autoagglutination protein [Shigella flexneri 2a str. 301], gi\|... gi\|30040814, gi\|... - gi\|30062568\|ref\|NP_836739.1\| putative autoagglutination protein [Shigella flexneri 2a str. 2457T], g...	156.0	[0..1]	[108..1]
gi\|227886601, gi... - gi\|227886601\|ref\|ZP_04004406.1\| autoagglutination protein [Escherichia coli 83972], gi\|227836805\|gb\|... gi\|26107581, gi\|... - gi\|26247180\|ref\|NP_753220.1\| putative autoagglutination protein [Escherichia coli CFT073], gi\|261075...	155.0	[0..1]	[108..1]
gi\|191172458, gi... - gi\|191172458\|ref\|ZP_03033999.1\| curli production protein CsgC [Escherichia coli F11], gi\|190907342\|g... gi\|110641220, gi... - gi\|110641220\|ref\|YP_668950.1\| putative autoagglutination protein [Escherichia coli 536], gi\|11034281...	155.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTLLLLAAL SNQITFTTTQ QGDIYTVIPQ VTLNEPCVCL VQILSVRDGV GGQSHTQQKQ  60
   61 TLSLPANQPI ELSRLSVNIS SEDSVKIIVT VSDGQSLHLS QQWPPSAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits