YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213647847
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213647847.

Description	E-value	Query Range	Subject Range
gi\|200390386, gi... - gi\|200390386\|ref\|ZP_03216997.1\| YbjP [Salmonella enterica subsp. enterica serovar Virchow str. SL491... gi\|205271922, gi... - gi\|205352141\|ref\|YP_002225942.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|197213708, gi... - gi\|197250005\|ref\|YP_002145845.1\| YbjP [Salmonella enterica subsp. enterica serovar Agona str. SL483]... gi\|197244057, gi... - gi\|197265802\|ref\|ZP_03165876.1\| YbjP [Salmonella enterica subsp. enterica serovar Saintpaul str. SAR... gi\|194447471, gi... - gi\|194447471\|ref\|YP_002044922.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar H... gi\|194472332, gi... - gi\|194472332\|ref\|ZP_03078316.1\| YbjP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM2... lcl\|NC_016856.1_... - [gene=ybjP] [protein=putative lipoprotein] [protein_id=YP_005236635.1] [location=complement(963053..... gi\|205343006, gi... - gi\|205343006\|gb\|EDZ29770.1\| YbjP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N0... gi\|194404551, gi... - gi\|194445888\|ref\|YP_002040130.1\| YbjP [Salmonella enterica subsp. enterica serovar Newport str. SL25... gi\|205347836, gi... - gi\|205347836\|gb\|EDZ34467.1\| YbjP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066],... gi\|168466510, gi... - gi\|195630886\|gb\|EDX49472.1\| YbjP [Salmonella enterica subsp. enterica serovar Newport str. SL317], g... gi\|238913409 - gi\|238913409\|ref\|ZP_04657246.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|168230799, gi... - gi\|205334745\|gb\|EDZ21509.1\| YbjP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]... gi\|205340277, gi... - gi\|205340277\|gb\|EDZ27041.1\| YbjP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]... gi\|205324477, gi... - gi\|205324477\|gb\|EDZ12316.1\| YbjP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29]... gi\|167992145, gi... - gi\|205329577\|gb\|EDZ16341.1\| YbjP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM2... gi\|161614843, gi... - gi\|161614843\|ref\|YP_001588808.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|62127087, gi\|... - gi\|62179454\|ref\|YP_215871.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Chole... gi\|16764253, gi\|... - gi\|16764253\|ref\|NP_459868.1\| putative lipoprotein [Salmonella typhimurium LT2], gi\|16419400\|gb\|AAL19... gi\|207856324, gi... - gi\|207856324\|ref\|YP_002242975.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|224582742, gi... - gi\|224582742\|ref\|YP_002636540.1\| probable lipoprotein [Salmonella enterica subsp. enterica serovar P...	1.0E-84	[1..171]	[1..171]
gi\|56128275, gi\|... - gi\|56414018\|ref\|YP_151093.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|197094418, gi... - gi\|197362941\|ref\|YP_002142578.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P...	9.0E-83	[1..171]	[1..171]
gi\|26107288, gi\|... - gi\|26246888\|ref\|NP_752928.1\| putative lipoprotein [Escherichia coli CFT073], gi\|26107288\|gb\|AAN79471... gi\|227884171, gi... - gi\|227884171\|ref\|ZP_04001976.1\| lipoprotein [Escherichia coli 83972], gi\|227838923\|gb\|EEJ49389.1\| li... gi\|91209899, gi\|... - gi\|91209899\|ref\|YP_539885.1\| putative lipoprotein [Escherichia coli UTI89], gi\|91071473\|gb\|ABE06354.... gi\|237707171, gi... - gi\|237707171\|ref\|ZP_04537652.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	5.0E-81	[1..171]	[9..179]
gi\|190907653, gi... - gi\|75240929\|ref\|ZP_00724818.1\| COG0174: Glutamine synthetase [Escherichia coli F11], gi\|191172126\|re... gi\|110641066, gi... - gi\|110641066\|ref\|YP_668796.1\| putative lipoprotein [Escherichia coli 536], gi\|110342658\|gb\|ABG68895....	3.0E-80	[1..171]	[1..171]
gi\|218704292, gi... - gi\|218704292\|ref\|YP_002411811.1\| putative lipoprotein [Escherichia coli UMN026], gi\|218431389\|emb\|CA... gi\|74311409, gi\|... - gi\|74311409\|ref\|YP_309828.1\| putative lipoprotein [Shigella sonnei Ss046], gi\|73854886\|gb\|AAZ87593.1...	2.0E-78	[1..171]	[1..171]
gi\|157160388, gi... - gi\|75195054\|ref\|ZP_00705124.1\| COG0174: Glutamine synthetase [Escherichia coli HS], gi\|157160388\|ref... gi\|188492610, gi... - gi\|75512871\|ref\|ZP_00735363.1\| COG0174: Glutamine synthetase [Escherichia coli 53638], gi\|188492610\|... EG13685 - lipoprotein / Novel verified lipoprotein, function unknown gi\|253972881, gi... - gi\|254160980\|ref\|YP_003044088.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397288... gi\|124501467, gi... - gi\|124527122\|ref\|ZP_01698959.1\| lipoprotein [Escherichia coli B], gi\|124501467\|gb\|EAY48931.1\| lipopr... gi\|253977095, gi... - gi\|254287788\|ref\|YP_003053536.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253977095\|gb... gi\|242376680, gi... - gi\|251784407\|ref\|YP_002998711.1\| hypothetical protein B21_00876 [Escherichia coli BL21], gi\|24237668... EG13685 - lipoprotein / Novel verified lipoprotein, function unknown gi\|83586178, gi\|... - gi\|83586178\|ref\|ZP_00924815.1\| COG0174: Glutamine synthetase [Escherichia coli 101-1], gi\|194438464\|... gi\|238862615, gi... - gi\|238900124\|ref\|YP_002925920.1\| putative lipoprotein [Escherichia coli BW2952], gi\|238862615\|gb\|ACR... gi\|89107716, gi\|... - gi\|89107716\|ref\|AP_001496.1\| predicted lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|40... gi\|169755660, gi... - gi\|170020732\|ref\|YP_001725686.1\| putative lipoprotein [Escherichia coli ATCC 8739], gi\|169755660\|gb\|... gi\|170080524, gi... - gi\|170080524\|ref\|YP_001729844.1\| lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|16988835... YBJP_ECOLI - Putative lipoprotein ybjP precursor - Escherichia coli gi\|218694339, gi... - gi\|218694339\|ref\|YP_002402006.1\| putative lipoprotein [Escherichia coli 55989], gi\|218351071\|emb\|CAU...	2.0E-78	[1..171]	[1..171]
gi\|208738025, gi... - gi\|208822540\|ref\|ZP_03262859.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208731475, gi... - gi\|208814827\|ref\|ZP_03256006.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|25332875 - pir\|\|D90747 probable enzyme [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi\|208727224, gi... - gi\|208807423\|ref\|ZP_03249760.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|15830202, gi\|... - gi\|15830202\|ref\|NP_308975.1\| hypothetical protein ECs0948 [Escherichia coli O157:H7], gi\|13360407\|db... gi\|195936914 - gi\|195936914\|ref\|ZP_03082296.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4024] gi\|217325893, gi... - gi\|217325893\|ref\|ZP_03441977.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|209398500, gi... - gi\|209398500\|ref\|YP_002269538.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|15830202, gi\|... - gi\|15830202\|ref\|NP_308975.1\| putative lipoprotein [Escherichia coli O157:H7 str. Sakai], gi\|13360407... gi\|168763280, gi... - gi\|189366521\|gb\|EDU84937.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876328... gi\|168756664, gi... - gi\|189356281\|gb\|EDU74700.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875666... gi\|168750054, gi... - gi\|188015701\|gb\|EDU53823.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16875005... gi\|189377787, gi... - gi\|189377787\|gb\|EDU96203.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168799848... gi\|189002900, gi... - gi\|189002900\|gb\|EDU71886.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16877942... gi\|187768239, gi... - gi\|187768239\|gb\|EDU32083.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877641... gi\|168767380, gi... - gi\|189363432\|gb\|EDU81851.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876738... gi\|254591464, gi... - gi\|254792064\|ref\|YP_003076901.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2...	8.0E-78	[1..171]	[1..171]
gi\|110614410, gi... - gi\|110804862\|ref\|YP_688382.1\| putative lipoprotein [Shigella flexneri 5 str. 8401], gi\|110614410\|gb\|... gi\|30040592, gi\|... - gi\|30062347\|ref\|NP_836518.1\| putative lipoprotein [Shigella flexneri 2a str. 2457T], gi\|30040592\|gb\|... gi\|56383299, gi\|... - gi\|56479748\|ref\|NP_706745.2\| putative lipoprotein [Shigella flexneri 2a str. 301], gi\|56383299\|gb\|AA...	1.0E-77	[1..171]	[1..171]
gi\|75189905, gi\|... - gi\|75189905\|ref\|ZP_00703172.1\| COG0174: Glutamine synthetase [Escherichia coli E24377A], gi\|15715723... gi\|192928887, gi... - gi\|75257537\|ref\|ZP_00729034.1\| COG0174: Glutamine synthetase [Escherichia coli E22], gi\|193064425\|re... gi\|209918114, gi... - gi\|209918114\|ref\|YP_002292198.1\| putative lipoprotein [Escherichia coli SE11], gi\|209911373\|dbj\|BAG7... gi\|193069338, gi... - gi\|75236078\|ref\|ZP_00720202.1\| COG0174: Glutamine synthetase [Escherichia coli E110019], gi\|19306933... gi\|218360219, gi... - gi\|218553451\|ref\|YP_002386364.1\| putative lipoprotein [Escherichia coli IAI1], gi\|218360219\|emb\|CAQ9... gi\|190903807, gi... - gi\|75230715\|ref\|ZP_00717186.1\| COG0174: Glutamine synthetase [Escherichia coli B7A], gi\|191166198\|re... gi\|194413721, gi... - gi\|75210539\|ref\|ZP_00710687.1\| COG0174: Glutamine synthetase [Escherichia coli B171], gi\|194428161\|r...	1.0E-77	[1..171]	[1..171]
gi\|15800620, gi\|... - gi\|15800620\|ref\|NP_286634.1\| putative lipoprotein [Escherichia coli O157:H7 EDL933], gi\|12513886\|gb\|... gi\|25332877 - pir\|\|H85597 probable enzyme ybjP [imported] - Escherichia coli (strain O157:H7, substrain EDL933)	3.0E-77	[1..171]	[3..173]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYSKLSLLI PCALLLSACT TVTPAYKDNG PRIGACVEGG PDSVAQQFYD YRIQHHSNDI  60
   61 AALRPYLSDN LAKLLTDASR DTEHRQLMSG DMFSSRATLP DSANVASAST IPNRDARNIP 120
  121 LRVALKQGDQ SWQDEVLMIH EGSCWVIDDV RYLGGDVHAP AGTLRQSIEN R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.442	d.3.1	Cysteine proteinases
View	Download	0.369	a.79.1	Antitermination factor NusB
View	Download	0.340	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.238	d.17.4	NTF2-like
View	Download	0.218	d.55.1	Ribosomal protein L22

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits