YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195011583, gi...
Organism:	Drosophila grimshawi
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195011583, gi....

Description	E-value	Query Range	Subject Range
gi\|113411549, gi... - gi\|113412478\|ref\|XP_001131332.1\| PREDICTED: similar to suppressor of initiator codon mutations, rela...	182.0	[0..2]	[110..179]
gi\|94365786, gi\|... - gi\|94365786\|ref\|XP_997192.1\| PREDICTED: similar to suppressor of initiator codon mutations, related ...	180.0	[0..2]	[109..132]
gi\|114667151 - gi\|114667151\|ref\|XP_511489.2\| PREDICTED: similar to isolog of yeast sui1 and rice gos2; putative [Pa...	176.0	[0..2]	[110..140]
gi\|109115342 - gi\|109115342\|ref\|XP_001092971.1\| PREDICTED: similar to Eukaryotic translation initiation factor 1 (e...	176.0	[0..2]	[110..265]
gi\|50760847 - gi\|50760847\|ref\|XP_418159.1\| PREDICTED: similar to Eukaryotic translation initiation factor 1 (eIF1)...	171.0	[0..2]	[110..255]
gi\|109474639, gi... - gi\|109476104\|ref\|XP_001070988.1\| PREDICTED: similar to suppressor of initiator codon mutations, rela...	171.0	[0..2]	[110..92]
gi\|91092962 - gi\|91092962\|ref\|XP_972771.1\| PREDICTED: similar to Protein translation factor SUI1 homolog [Triboliu...	169.0	[0..1]	[110..1]
gi\|48099870 - gi\|48099870\|ref\|XP_392601.1\| PREDICTED: similar to Protein translation factor SUI1 homolog [Apis mel... gi\|156555265 - gi\|156555265\|ref\|XP_001601324.1\| PREDICTED: similar to translation initiation factor 1 [Nasonia vitr...	166.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQNLNTRD PFADAIKGND DDIQDGLVHI RIQQRNGRKT LTTVQGLSAE YDLKKIVRSC  60
   61 KKEFACNGTV IEHPEYGEVL QLQGDQRENI CQWLTKVGLA KPDQLKVHGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation initiation factor activity	6.56930940751046	bayes_pls_golite062009
nucleic acid binding	2.96971687610169	bayes_pls_golite062009
binding	2.42849959483419	bayes_pls_golite062009
translation regulator activity	2.27579767245564	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.25914933413253	bayes_pls_golite062009
protein binding	0.420735403363425	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: