YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226234013, gi...
Organism:	Borrelia burgdorferi 29805
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226234013, gi....

Description	E-value	Query Range	Subject Range
gi\|110890392, gi... - gi\|111115118\|ref\|YP_709736.1\| flagellar basal body rod protein FlgC [Borrelia afzelii PKo], gi\|11089...	145.0	[0..1]	[151..1]
gi\|51573124, gi\|... - gi\|51598553\|ref\|YP_072741.1\| flagellar basal body rod protein FlgC [Borrelia garinii PBi], gi\|515731...	142.0	[0..1]	[151..1]
gi\|1448943 - gi\|1448943\|gb\|AAB04619.1\| flagellar basal body distal rod protein	139.0	[0..1]	[152..1]
gi\|42526722, gi\|... - gi\|42526722\|ref\|NP_971820.1\| flagellar basal body rod protein FlgC [Treponema denticola ATCC 35405],...	132.0	[0..1]	[151..1]
gi\|116332198, gi... - gi\|116332198\|ref\|YP_801916.1\| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serov... gi\|116327145, gi... - gi\|116327145\|ref\|YP_796865.1\| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serov...	131.0	[0..1]	[151..1]
gi\|45656202, gi\|... - gi\|45656202\|ref\|YP_000288.1\| flagellar basal body rod protein FlgC [Leptospira interrogans serovar C... gi\|24193737, gi\|... - gi\|24213046\|ref\|NP_710527.1\| flagellar basal body rod protein FlgC [Leptospira interrogans serovar L...	130.0	[0..1]	[151..3]
gi\|83572535, gi\|... - gi\|83589621\|ref\|YP_429630.1\| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 3907...	126.0	[0..1]	[151..1]
gi\|196196890, gi... - gi\|196253685\|ref\|ZP_03152300.1\| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM ... gi\|125713209, gi... - gi\|67875408\|ref\|ZP_00504748.1\| Flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC ...	125.0	[0..1]	[151..1]
gi\|20807891, gi\|... - gi\|20807891\|ref\|NP_623062.1\| flagellar basal body rod protein [Thermoanaerobacter tengcongensis MB4]... gi\|20807891 - gi\|20807891\|ref\|NP_623062.1\| Flagellar basal body rod protein [Thermoanaerobacter tengcongensis MB4]	121.0	[0..1]	[151..1]
gi\|89210115, gi\|... - gi\|89210115\|ref\|ZP_01188507.1\| Flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168],...	121.0	[0..3]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFSSINVA STGLTAQRLR IDVISNNIAN VSTSRTPDGG PYRRQRIIFA PRVNNPYWKG  60
   61 PFIPDYLDNG IGQGVRVASI EKDKSPLKLK YDPAHPDSIS SGDKKGYVEL PNVNLVEEMV 120
  121 DMISASRAYE ANSTVINSSK SMFRSALAIL QG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.39794
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits