YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190408277
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190408277.

Description	E-value	Query Range	Subject Range
gi\|190408277 - gi\|190408277\|gb\|EDV11542.1\| hypothetical protein SCRG_01937 [Saccharomyces cerevisiae RM11-1a] YET2_YEAST - Endoplasmic reticulum transmembrane protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... YET2 - Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	1.0E-39	[1..160]	[1..160]
SPAC9E9.04 - bcap family homolog YF14_SCHPO - Uncharacterized protein C9E9.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC9E9.04...	9.0E-39	[1..159]	[1..158]
BAP29_MOUSE - B-cell receptor-associated protein 29 OS=Mus musculus GN=Bcap29 PE=1 SV=1	9.0E-34	[1..159]	[1..159]
CE25462 - status:Confirmed UniProt:Q9N3B5 protein_id:AAF59580.1	5.0E-33	[1..157]	[1..154]
gi\|220944496, gi... - gi\|220954296\|gb\|ACL89691.1\| CG13887-PB [synthetic construct], gi\|220944496\|gb\|ACL84791.1\| CG13887-PB... FBpp0311657, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG13887 (CG13887, FBgn0035165). It is a prote...	5.0E-31	[1..159]	[1..156]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVYLAVLFS LLVIEMAILF ILVLPLPQRM RRWLYIRYSI ISTNKKFRTY MVGIMIFVGL  60
   61 LFIDSWKRSQ IRVSTYRNQK NPYIINSVTP VDALASRAYN QRNVYISGFI IYFYICILTV 120
  121 MSILRRIVEW NDKMKAGDDI LKEKLRRKQK YLEELQKKKF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits