YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|169888434, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|169888434, gi....

Description	E-value	Query Range	Subject Range
gi\|74311498, gi\|... - gi\|74311498\|ref\|YP_309917.1\| FimH-like protein [Shigella sonnei Ss046], gi\|73854975\|gb\|AAZ87682.1\| F...	259.0	[0..1]	[356..1]
gi\|81240380, gi\|... - gi\|82776232\|ref\|YP_402581.1\| FimH-like protein [Shigella dysenteriae Sd197], gi\|81240380\|gb\|ABB61090...	242.0	[0..14]	[356..13]
gi\|30040724, gi\|... - gi\|30062478\|ref\|NP_836649.1\| fimbrial protein [Shigella flexneri 2a str. 2457T], gi\|30040724\|gb\|AAP1... gi\|24112354, gi\|... - gi\|24112354\|ref\|NP_706864.1\| fimbrial protein [Shigella flexneri 2a str. 301], gi\|24051219\|gb\|AAN425...	241.0	[0..1]	[325..1]
gi\|75214613 - gi\|75214613\|ref\|ZP_00713151.1\| hypothetical protein EcolE1_01004706 [Escherichia coli E110019]	238.0	[0..10]	[356..2]
ELFG_ECO57 - Uncharacterized fimbrial-like protein ElfG OS=Escherichia coli O157:H7 GN=elfG PE=2 SV=1 gi\|25500156, gi\|... - pir\|\|G85620 homolog of Salmonella FimH protein [imported] - Escherichia coli (strain O157:H7, substr... gi\|12514120, gi\|... - gi\|15800801\|ref\|NP_286816.1\| fimbrial protein [Escherichia coli O157:H7 EDL933], gi\|12514120\|gb\|AAG5... gi\|254792140, gi... - gi\|254792140\|ref\|YP_003076977.1\| predicted fimbrial-like adhesin protein [Escherichia coli O157:H7 s... gi\|217321940, gi... - gi\|217325719\|ref\|ZP_03441803.1\| putative fimbrial protein [Escherichia coli O157:H7 str. TW14588], g... gi\|195939645 - gi\|195939645\|ref\|ZP_03085027.1\| FimH-like protein [Escherichia coli O157:H7 str. EC4024] gi\|13360484, gi\|... - gi\|15830279\|ref\|NP_309052.1\| FimH-like protein [Escherichia coli O157:H7 str. Sakai], gi\|13360484\|db...	234.0	[0..1]	[325..1]
gi\|83585884 - gi\|83585884\|ref\|ZP_00924524.1\| COG0474: Cation transport ATPase [Escherichia coli 101-1]	234.0	[0..22]	[356..1]
gi\|75210368 - gi\|75210368\|ref\|ZP_00710524.1\| COG0474: Cation transport ATPase [Escherichia coli B171] gi\|75178245 - gi\|75178245\|ref\|ZP_00698299.1\| COG0474: Cation transport ATPase [Shigella boydii BS512]	234.0	[0..22]	[356..1]
gi\|75512101 - gi\|75512101\|ref\|ZP_00734686.1\| COG0474: Cation transport ATPase [Escherichia coli 53638] gi\|75195131 - gi\|75195131\|ref\|ZP_00705201.1\| COG0474: Cation transport ATPase [Escherichia coli HS]	233.0	[0..22]	[356..1]
gi\|83569168 - gi\|83569168\|ref\|ZP_00920627.1\| hypothetical protein Sdys1_01002606 [Shigella dysenteriae 1012]	233.0	[0..22]	[356..1]
gi\|75229853 - gi\|75229853\|ref\|ZP_00716376.1\| hypothetical protein EcolB7_01001897 [Escherichia coli B7A] gi\|75190010 - gi\|75190010\|ref\|ZP_00703277.1\| hypothetical protein EcolE_01003304 [Escherichia coli E24377A]	232.0	[0..22]	[356..1]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIIFGEKCV SLLRLFFAAV LMLWCAQTAA YSGQCHTTQG NPYIGVNFGV KTLEEEANTA  60
   61 GVVKDKFYQW NESNDYYVSC DCDKDNVRSG RWAFAADSPL VYLGDNWYKI NDYLAAKVLL 120
  121 QVKGSSPTAV PFENVGTGGD T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RWHICDPGGQ RLGGQGASGN SGSFSLKILQ PFVGSVVIPP MALARLYECY NIPAGDSCTT  60
   61 TGTPVLVYYL SGTINSLGSC SVNAGETIEV DLGDVFAANF RVVGHKPLGA RTAELAIPVR 120
  121 CNTGNAGLVN VNLSLTATTD PSYPQAIKTS RPGVGVVVTD SQNNIISPAG GTLPLSIPDD 180
  181 ADSIARMNVY PVSTTGVPPE TGRFEATATV RINFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.045757
Match:	1kiuB
Description:	Mannose-specific adhesin FimH
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits