YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|223490027, gi...
Organism:	Carboxydibrachium pacificum DSM 12653
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|223490027, gi....

Description	E-value	Query Range	Subject Range
gi\|241883990, gi... - gi\|241903683\|ref\|ZP_04788403.1\| acetylglutamate kinase [Thermoanaerobacter brockii subsp. finnii Ako... ARGB_THEP3 - Acetylglutamate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=argB PE=3...	273.0	[0..1]	[299..1]
gi\|255271788, gi... - gi\|255337549\|ref\|ZP_05378427.1\| acetylglutamate kinase [Thermoanaerobacter mathranii subsp. mathrani... ARGB_THEPX - Acetylglutamate kinase OS=Thermoanaerobacter sp. (strain X514) GN=argB PE=3 SV=1 gi\|242256152, gi... - gi\|242256152\|ref\|ZP_04801048.1\| acetylglutamate kinase [Thermoanaerobacter sp. X513], gi\|242232350\|g...	270.0	[0..1]	[299..1]
ARGB_SYNS9 - Acetylglutamate kinase OS=Synechococcus sp. (strain CC9902) GN=argB PE=3 SV=1	265.0	[0..9]	[297..9]
gi\|14140161 - gi\|14140161\|emb\|CAC39078.1\| acetylglutamate kinase-like protein [Oryza sativa] gi\|49387584, gi\|... - gi\|50911447\|ref\|XP_467131.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|49388569\|d...	263.0	[0..13]	[290..68]
gi\|116072881, gi... - gi\|116072881\|ref\|ZP_01470146.1\| acetylglutamate kinase [Synechococcus sp. BL107], gi\|116064407\|gb\|EA...	263.0	[0..9]	[297..9]
ARGB_SYNE7 - Acetylglutamate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=argB PE=1 SV=1 ARGB_SYNP6 - Acetylglutamate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argB PE=...	262.0	[0..10]	[290..10]
ARGB_NOSS1 - Acetylglutamate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=argB PE=3 SV=1 gi\|25288177 - pir\|\|AB1962 acetylglutamate kinase [imported] - Nostoc sp. (strain PCC 7120)	261.0	[0..8]	[295..11]
ARGB_NOSP7 - Acetylglutamate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=argB PE=3 SV=1	260.0	[0..8]	[289..11]
ARGB_ANAVT - Acetylglutamate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=argB PE=3 SV=1	260.0	[0..8]	[295..11]
ARGB_FRASC - Acetylglutamate kinase OS=Frankia sp. (strain CcI3) GN=argB PE=3 SV=1	260.0	[0..10]	[293..46]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKEKFGDE ILKAHILVEA LPYIKKFSGK TVVIKYGGSA MLDCNLKKMV MQDVVLMKFV  60
   61 GLNPVIVHGG GPEISSFLKK LGIESKFVNG LRVTDEKTAE IVEMVLVGKI NKEIVSMINE 120
  121 LGGMAVGISG KDGKLLKAEK DLSNGDLGYV GKIVEVNIEV IEMLIDRGYI PVIAPVSFGD 180
  181 DGKTYNVNAD TAAGKIAEAL KAEKLILLTD VEGVLENVED KTSLISRMDL EHAKKLMDSG 240
  241 RINGGMIPKL KCCIKAVENG VKRAHIIDGR LTHSLLLEIF TDEGIGTMIG KECFDDDNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.39794
Match:	2jj4A
Description:	No description for 2jj4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits