YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224584941, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224584941, gi....

Description	E-value	Query Range	Subject Range
gi\|16421699, gi\|... - gi\|16766445\|ref\|NP_462060.1\| hydrogenase 2-specific chaperone [Salmonella typhimurium LT2], gi\|16421... lcl\|NC_016856.1_... - [gene=hybE] [protein=hydrogenase 2-specific chaperone] [protein_id=YP_005239308.1] [location=complem... gi\|194402589, gi... - gi\|194443926\|ref\|YP_002042409.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|200386813, gi... - gi\|200386813\|ref\|ZP_03213425.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|205331269, gi... - gi\|205331269\|gb\|EDZ18033.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser...	3.0E-64	[1..162]	[1..162]
gi\|81242387, gi\|... - gi\|82778239\|ref\|YP_404588.1\| hydrogenase 2-specific chaperone [Shigella dysenteriae Sd197], gi\|81242...	3.0E-62	[1..162]	[1..162]
EG11803 - hydrogenase 2-specific chaperone / Hydrogenase 2-specific chaperone HYBE_ECOL6 - Hydrogenase-2 operon protein hybE OS=Escherichia coli O6 GN=hybE PE=3 SV=1 HYBE_ECOL6 - Hydrogenase-2 operon protein HybE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... EG11803 - hydrogenase 2-specific chaperone / Hydrogenase 2-specific chaperone gi\|85675800, gi\|... - gi\|89109767\|ref\|AP_003547.1\| hydrogenase 2-specific chaperone [Escherichia coli str. K-12 substr. W3... gi\|74313537, gi\|... - gi\|74313537\|ref\|YP_311956.1\| hydrogenase 2-specific chaperone [Shigella sonnei Ss046], gi\|73857014\|g... gi\|124502192, gi... - gi\|124526088\|ref\|ZP_01698093.1\| HybE [Escherichia coli B], gi\|124502192\|gb\|EAY49652.1\| HybE [Escheri... gi\|82545270, gi\|... - gi\|82545270\|ref\|YP_409217.1\| hydrogenase 2-specific chaperone [Shigella boydii Sb227], gi\|81246681\|g... gi\|170018749, gi... - gi\|170018749\|ref\|YP_001723703.1\| hydrogenase 2-specific chaperone [Escherichia coli ATCC 8739], gi\|1... gi\|75187815, gi\|... - gi\|75187815\|ref\|ZP_00701082.1\| hypothetical protein EcolE_01001056 [Escherichia coli E24377A], gi\|15... gi\|194415765, gi... - gi\|75212362\|ref\|ZP_00712386.1\| hypothetical protein EcolB_01000445 [Escherichia coli B171], gi\|19442... gi\|83587561, gi\|... - gi\|83587561\|ref\|ZP_00926188.1\| hypothetical protein Ecol1_01001091 [Escherichia coli 101-1], gi\|1944... gi\|187427237, gi... - gi\|75178891\|ref\|ZP_00698927.1\| hypothetical protein SboyB_01001283 [Shigella boydii BS512], gi\|18773... gi\|75259938, gi\|... - gi\|75259938\|ref\|ZP_00731216.1\| hypothetical protein EcolE2_01000336 [Escherichia coli E22], gi\|19306... gi\|75515210, gi\|... - gi\|75515210\|ref\|ZP_00737394.1\| hypothetical protein Ecol5_01000791 [Escherichia coli 53638], gi\|1884... gi\|75229321, gi\|... - gi\|75229321\|ref\|ZP_00715880.1\| hypothetical protein EcolB7_01002468 [Escherichia coli B7A], gi\|19116... gi\|192959223, gi... - gi\|75239424\|ref\|ZP_00723395.1\| hypothetical protein EcolE1_01000497 [Escherichia coli E110019], gi\|1... HYBE_ECOLI - Hydrogenase-2 operon protein hybE - Escherichia coli gi\|238902110, gi... - gi\|238902110\|ref\|YP_002927906.1\| hydrogenase 2-specific chaperone [Escherichia coli BW2952], gi\|2388... gi\|251786275, gi... - gi\|251786275\|ref\|YP_003000579.1\| hypothetical protein B21_02817 [Escherichia coli BL21], gi\|24237854... gi\|253979002, gi... - gi\|254289695\|ref\|YP_003055443.1\| hydrogenase 2-specific chaperone [Escherichia coli BL21(DE3)], gi\|2... gi\|209913727, gi... - gi\|209920468\|ref\|YP_002294552.1\| hydrogenase 2-specific chaperone [Escherichia coli SE11], gi\|209913... gi\|254038161, gi... - gi\|254038161\|ref\|ZP_04872219.1\| hydrogenase-2 operon protein HybE [Escherichia sp. 1_1_43], gi\|22683... gi\|169890375, gi... - gi\|170082540\|ref\|YP_001731860.1\| hydrogenase 2-specific chaperone [Escherichia coli str. K-12 substr... gi\|254162946, gi... - gi\|254162946\|ref\|YP_003046054.1\| hydrogenase 2-specific chaperone [Escherichia coli B str. REL606], ... gi\|218706619, gi... - gi\|218706619\|ref\|YP_002414138.1\| hydrogenase 2-specific chaperone [Escherichia coli UMN026], gi\|2184... gi\|218353434, gi... - gi\|218696702\|ref\|YP_002404369.1\| hydrogenase 2-specific chaperone [Escherichia coli 55989], gi\|21835...	5.0E-62	[1..162]	[1..162]
gi\|157068152, gi... - gi\|75196956\|ref\|ZP_00707026.1\| hypothetical protein EcolH_01002768 [Escherichia coli HS], gi\|1571624...	9.0E-62	[1..162]	[1..162]
gi\|190907246, gi... - gi\|75240552\|ref\|ZP_00724480.1\| hypothetical protein EcolF_01002478 [Escherichia coli F11], gi\|191172... gi\|226899301, gi... - gi\|237706261\|ref\|ZP_04536742.1\| hydrogenase-2 operon protein HybE [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91212406, gi\|... - gi\|91212406\|ref\|YP_542392.1\| hydrogenase 2-specific chaperone [Escherichia coli UTI89], gi\|91073980\|... gi\|115514421, gi... - gi\|117625297\|ref\|YP_854469.1\| hydrogenase 2-specific chaperone [Escherichia coli APEC O1], gi\|115514... gi\|218366836, gi... - gi\|218560067\|ref\|YP_002392980.1\| hydrogenase 2-specific chaperone [Escherichia coli S88], gi\|2183668...	2.0E-61	[1..162]	[1..162]
gi\|544487 - gi\|544487\|gb\|AAA21593.1\| hybE	2.0E-61	[1..162]	[1..162]
gi\|110616443, gi... - gi\|110806895\|ref\|YP_690415.1\| hydrogenase 2-specific chaperone [Shigella flexneri 5 str. 8401], gi\|1... gi\|30064347, gi\|... - gi\|30064347\|ref\|NP_838518.1\| hydrogenase 2-specific chaperone [Shigella flexneri 2a str. 2457T], gi\|... gi\|24053457, gi\|... - gi\|24114300\|ref\|NP_708810.1\| hydrogenase 2-specific chaperone [Shigella flexneri 2a str. 301], gi\|24...	3.0E-61	[1..162]	[1..162]
gi\|168753956, gi... - gi\|189358611\|gb\|EDU77030.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4401]... gi\|168747503, gi... - gi\|188017836\|gb\|EDU55958.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4113]... gi\|168781863, gi... - gi\|189000606\|gb\|EDU69592.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4076]... gi\|15833131, gi\|... - gi\|15833131\|ref\|NP_311904.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. Sakai],... gi\|168773356, gi... - gi\|187770912\|gb\|EDU34756.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4196]... gi\|189363801, gi... - gi\|189363801\|gb\|EDU82220.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4486]... gi\|168760147, gi... - gi\|189369228\|gb\|EDU87644.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4501]... gi\|254594349, gi... - gi\|254794949\|ref\|YP_003079786.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. TW1... HYBE_ECO57 - Hydrogenase-2 operon protein HybE OS=Escherichia coli O157:H7 GN=hybE PE=3 SV=1 gi\|208727487, gi... - gi\|208807686\|ref\|ZP_03250023.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4... gi\|195937138 - gi\|195937138\|ref\|ZP_03082520.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. EC40... gi\|12517556, gi\|... - gi\|15803537\|ref\|NP_289570.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 EDL933], gi\|... gi\|189379799, gi... - gi\|189379799\|gb\|EDU98215.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC508],... gi\|25391406, gi\|... - pir\|\|E85958 member of hyb operon [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|189374124, gi... - gi\|189374124\|gb\|EDU92540.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC869],... gi\|217319458, gi... - gi\|217327091\|ref\|ZP_03443174.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. TW1... gi\|209157699, gi... - gi\|209396299\|ref\|YP_002272471.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC... gi\|208821024, gi... - gi\|208821024\|ref\|ZP_03261344.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4... gi\|208814480, gi... - gi\|208814480\|ref\|ZP_03255809.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4...	9.0E-61	[1..162]	[1..162]
gi\|110643232, gi... - gi\|110643232\|ref\|YP_670962.1\| hydrogenase 2-specific chaperone [Escherichia coli 536], gi\|110344824\|...	1.0E-60	[1..162]	[1..162]
HUPJ_RHOCA - Probable rubredoxin HupJ OS=Rhodobacter capsulatus GN=hupJ PE=3 SV=2	4.0E-53	[2..151]	[75..230]

Back

Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETFSGFDT APVARVQAAF EEIAHRSMHD LSFLHPTMPV HVSDFTLFEG QWTGTVITPW  60
   61 MLSALIFPGP DQIWPGRTVG EKLGLQLPYG TMTFTVGELE GVSQYLACSL MSPLSRSLSP 120
  121 EEGVRLADDC ARMLLSLPVS NPDAPQTSRR ALLFGRRSCE NA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits