YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195582268, gi...
Organism:	Drosophila simulans
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195582268, gi....

Description	E-value	Query Range	Subject Range
NOP10_DANRE - H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1	109.0	[0..1]	[63..1]
AGAP005149-PA - H/ACA ribonucleoprotein complex subunit 3\|protein_coding\|2L:10577719:10577972:-1\|gene:AGAP005149 gi\|55240537, gi\|... - gi\|58385557\|ref\|XP_314037.2\| AGAP005149-PA [Anopheles gambiae str. PEST], gi\|55240537\|gb\|EAA09445.2\|...	109.0	[0..1]	[64..1]
gi\|49121065, gi\|... - gi\|67902534\|ref\|XP_681523.1\| hypothetical protein AN8254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	108.0	[0..1]	[60..1]
gi\|47213487 - gi\|47213487\|emb\|CAF91144.1\| unnamed protein product [Tetraodon nigroviridis]	107.0	[0..1]	[63..1]
gi\|157116047, gi... - gi\|157116047\|ref\|XP_001658356.1\| hypothetical protein AaeL_AAEL007431 [Aedes aegypti], gi\|108876656\|...	107.0	[0..1]	[64..1]
gi\|110749879 - gi\|110749879\|ref\|XP_001120529.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Apis me...	107.0	[0..1]	[64..1]
gi\|73999753 - gi\|73999753\|ref\|XP_849017.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Canis famil...	107.0	[0..1]	[63..103]
gi\|54636914\|gb\|E... - GA20497-PA [Drosophila pseudoobscura], GA20497 [Drosophila pseudoobscura pseudoobscura] gi\|195153525, gi... - gi\|195153525\|ref\|XP_002017676.1\| GL17179 [Drosophila persimilis], gi\|194113472\|gb\|EDW35515.1\| GL1717... gi\|54636914, gi\|... - gi\|54636914\|gb\|EAL26317.1\| GA20497 [Drosophila pseudoobscura pseudoobscura], gi\|125811069\|ref\|XP_001...	105.0	[0..1]	[64..1]
gi\|57226489, gi\|... - gi\|58266200\|ref\|XP_570256.1\| hypothetical protein CND01790 [Cryptococcus neoformans var. neoformans ... gi\|50258390, gi\|... - gi\|50258390\|gb\|EAL21079.1\| hypothetical protein CNBD4550 [Cryptococcus neoformans var. neoformans B-...	105.0	[0..1]	[63..1]
gi\|91080289 - gi\|91080289\|ref\|XP_973962.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	105.0	[0..1]	[64..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLMYTINEN GDRVYTLKKR TEDGRPTLSA HPARFSPEDK YSRQRLTIKK RFGLLLTQKP  60
   61 EPIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1y2yA
Description:	Structural Characterization of Nop10p using Nuclear Magnetic Resonance Spectroscopy
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	3.61380698450754	bayes_pls_golite062009
nucleic acid binding	2.36306971710899	bayes_pls_golite062009
binding	2.07200237133183	bayes_pls_golite062009
protein binding	0.377070376016177	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: