YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167773997
Organism:	synthetic construct
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167773997.

Description	E-value	Query Range	Subject Range
gi\|119595576 - gi\|119595576\|gb\|EAW75170.1\| transcription elongation factor A (SII), 2, isoform CRA_c [Homo sapiens] gi\|114683105 - gi\|114683105\|ref\|XP_001152294.1\| PREDICTED: transcription elongation factor A protein 2 isoform 1 [P...	2.0E-93	[1..297]	[1..297]
gi\|109091270 - gi\|109091270\|ref\|XP_001083344.1\| PREDICTED: transcription elongation factor A protein 2 isoform 6 [M...	1.0E-92	[1..299]	[1..299]
gi\|29437299 - gi\|29437299\|gb\|AAH49617.1\| Tcea2 protein [Mus musculus]	6.0E-90	[2..299]	[31..329]
TCEA2_BOVIN - Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2 PE=2 SV=1	5.0E-89	[1..299]	[1..300]
gi\|73999378 - gi\|73999378\|ref\|XP_535071.2\| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...	9.0E-89	[3..299]	[141..442]
TCEA2_RAT - Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1 gi\|712842 - gi\|712842\|dbj\|BAA02310.1\| transcription elongation factor S-II [Rattus sp.]	6.0E-88	[2..299]	[1..299]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGKEEEIAR IARRLDKMVT KKSAEGAMDL LRELKAMPIT LHLLQSTRVG MSVNALRKQS  60
   61 SDEEVIALAK SLIKSWKKLL DASDAKARER GRGMPLPTSS RDASEAPDPS RKRPELPRAP 120
  121 STPRITTFPP VPVTCDAVRN KCREMLTAAL QTDHDHVAIG ADCERLSAQI EECIFRDVGN 180
  181 TDMKYKNRVR SRISNLKDAK NPDLRRNVLC GAITPQQIAV MTSEEMASDE LKEIRKAMTK 240
  241 EAIREHQMAR TGGTQTDLFT CGKCRKKNCT YTQVQTRSSD EPMTTFVVCN ECGNRWKFC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1pqvS
Description:	RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits