YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208968187, gi...
Organism:	synthetic construct
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208968187, gi....

Description	E-value	Query Range	Subject Range
gi\|119582938 - gi\|119582938\|gb\|EAW62534.1\| zinc finger, A20 domain containing 2, isoform CRA_b [Homo sapiens] gi\|114624993 - gi\|114624993\|ref\|XP_520073.2\| PREDICTED: similar to zinc finger protein 216 splice variant 1 isoform...	280.0	[0..1]	[213..53]
gi\|61877055 - gi\|61877055\|ref\|XP_585822.1\| PREDICTED: similar to Zinc finger A20 domain containing protein 2 (Zinc...	279.0	[0..1]	[213..22]
ZFAN5_RAT - AN1-type zinc finger protein 5 OS=Rattus norvegicus GN=Zfand5 PE=1 SV=1	265.0	[0..1]	[213..1]
ZFAN5_MOUSE - AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1	264.0	[0..1]	[213..1]
gi\|73946551 - gi\|73946551\|ref\|XP_858773.1\| PREDICTED: similar to Zinc finger A20 domain containing protein 2 (Zinc...	262.0	[0..1]	[213..1]
gi\|147900434, gi... - gi\|51703621\|gb\|AAH81266.1\| MGC86388 protein [Xenopus laevis], gi\|147900434\|ref\|NP_001087815.1\| MGC86...	256.0	[0..1]	[213..1]
gi\|62858893, gi\|... - gi\|62858893\|ref\|NP_001017128.1\| zinc finger, AN1-type domain 5 [Xenopus (Silurana) tropicalis], gi\|1...	255.0	[0..1]	[213..1]
gi\|115529238, gi... - gi\|70779223\|gb\|AAZ08234.1\| zinc finger protein 216 [Taeniopygia guttata], gi\|115529238\|ref\|NP_001070...	255.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQETNQTPG PMLCSTGCGF YGNPRTNGMC SVCYKEHLQR QQNSGRMSPM GTASGSNSPT  60
   61 SDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2c7mA
Description:	human Rabex-5 residues 1-74 in complex with Ubiquitin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [64-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASVQRADTSL NNCEGAAGST SEKSRNVPVA ALPVTQQMTE MSISREDKIT TPKTEVSEPV  60
   61 VTQPSPSVSQ PSTSQSEEKA PELPKPKKNR CFMCRKKVGL TGFDCRCGNL FCGLHRYSDK 120
  121 HNCPYDYKAE AAAKIRKENP VVVAEKIQRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1wflA
Description:	Solution structure of the zf-AN1 domain from mouse zinc finger protein 216
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits