YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207340933
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207340933.

Description	E-value	Query Range	Subject Range
gi\|207340933 - gi\|207340933\|gb\|EDZ69130.1\| YOR289Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407589 - gi\|190407589\|gb\|EDV10856.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151945371 - gi\|151945371\|gb\|EDN63614.1\| conserved protein [Saccharomyces cerevisiae YJM789] YOR289W - Putative protein of unknown function; transcription induced by the unfolded protein response; green ... YO289_YEAST - Uncharacterized protein YOR289W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR289W ...	4.0E-95	[1..251]	[1..251]
Y464_KLULA - Uncharacterized protein KLLA0D02464g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079... Y464_KLULA - Uncharacterized protein KLLA0D02464g OS=Kluyveromyces lactis GN=KLLA0D02464g PE=4 SV=1	3.0E-68	[23..249]	[6..223]
AMMR1_MOUSE - AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1 gi\|151556656, gi... - gi\|157170502\|gb\|AAI53031.1\| Alport syndrome, mental retardation, midface hypoplasia and elliptocytos...	5.0E-68	[23..244]	[138..322]
AMMECR1 - Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 gi\|109131916 - gi\|109131916\|ref\|XP_001099875.1\| PREDICTED: AMMECR1 protein [Macaca mulatta]	8.0E-68	[23..244]	[127..311]
AMERL_ARATH - Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1	1.0E-64	[25..247]	[7..195]
gi\|218185061 - gi\|218185061\|gb\|EEC67488.1\| hypothetical protein OsI_34746 [Oryza sativa Indica Group] gi\|222613318, gi... - gi\|37537060\|ref\|NP_922832.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|31433627\|g...	1.0E-63	[25..247]	[7..195]
CE03582 - status:Partially_confirmed UniProt:Q22004 protein_id:CAA90664.1	4.0E-61	[26..245]	[8..190]
Y1979_PYRFU, YJ7... - (Q8TZL1) Hypothetical protein PF1979, Protein PF1979 OS=Pyrococcus furiosus GN=PF1979 PE=3 SV=1 Y1979_PYRFU - Protein PF1979 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1979 PE=3...	2.0E-54	[40..239]	[9..194]
Y010_PYRAB - Protein PYRAB00100 OS=Pyrococcus abyssi GN=PYRAB00100 PE=3 SV=1 Y010_PYRAB - Protein PYRAB00100 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00100 PE=3 SV=1	3.0E-54	[40..239]	[9..194]
Y010_PYRHO - Protein PH0010 OS=Pyrococcus horikoshii GN=PH0010 PE=1 SV=1 Y010_PYRHO - Protein PH0010 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / O...	4.0E-54	[40..239]	[10..195]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRLFRKSS FFAKISMEGP KGSSPFAFYA FYQLYSHLNP GKSSSLSLED IRRRLYPDFK  60
   61 IDYNEKTSLF ITWKKKSNKH HTIDTNEENY ILRGCIGTFA KMPIAHGIEK YSLIAALEDR 120
  121 RFSPIQKREL VDLKCSCNIL GNFKTIFRGG GNPNGDIFDW ELGKHGIELY FKHPKTGTTC 180
  181 SATFLPDVMP EQHWNKEDTF ANLIEKAGYW GNISEVMDNF ETYFIEVIRY EGKKSSITYE 240
  241 EFNKQLKDIE A

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.346787
Match:	PF01871
Description:	AMMECR1

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits