YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213999498
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	701 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213999498.

Description	E-value	Query Range	Subject Range
gi\|81244455, gi\|... - gi\|82543044\|ref\|YP_406991.1\| carbon starvation protein [Shigella boydii Sb227], gi\|81244455\|gb\|ABB65...	0.0	[1..701]	[1..701]
gi\|157155305, gi... - gi\|157155305\|ref\|YP_001461761.1\| carbon starvation protein A [Escherichia coli E24377A], gi\|15707733... gi\|238899877, gi... - gi\|238899877\|ref\|YP_002925673.1\| carbon starvation protein [Escherichia coli BW2952], gi\|238860107\|g... gi\|169755971, gi... - gi\|170021043\|ref\|YP_001725997.1\| carbon starvation protein CstA [Escherichia coli ATCC 8739], gi\|169... gi\|170080280, gi... - gi\|170080280\|ref\|YP_001729600.1\| carbon starvation protein [Escherichia coli str. K-12 substr. DH10B... CSTA_ECOLI - Carbon starvation protein A - Escherichia coli EG10167 - carbon starvation protein involved in peptide utilization; APC peptide transporter family protein / ... gi\|124530202, gi... - gi\|124530202\|ref\|ZP_01700951.1\| carbon starvation protein CstA [Escherichia coli B], gi\|124499365\|gb... gi\|85674719, gi\|... - gi\|89107465\|ref\|AP_001245.1\| carbon starvation protein [Escherichia coli str. K-12 substr. W3110], g... EG10167 - carbon starvation protein involved in peptide utilization; APC peptide transporter family protein / ... gi\|157065774, gi... - gi\|157160094\|ref\|YP_001457412.1\| carbon starvation protein A [Escherichia coli HS], gi\|157065774\|gb\|...	0.0	[1..701]	[1..701]
gi\|110614136, gi... - gi\|110804588\|ref\|YP_688108.1\| carbon starvation protein [Shigella flexneri 5 str. 8401], gi\|11061413...	0.0	[1..701]	[1..701]
gi\|110640829, gi... - gi\|110640829\|ref\|YP_668557.1\| carbon starvation protein A [Escherichia coli 536], gi\|110342421\|gb\|AB... gi\|91209645, gi\|... - gi\|91209645\|ref\|YP_539631.1\| carbon starvation protein A [Escherichia coli UTI89], gi\|91071219\|gb\|AB... gi\|117622820, gi... - gi\|117622820\|ref\|YP_851733.1\| carbon starvation protein [Escherichia coli APEC O1], gi\|115511944\|gb\|... gi\|26106976, gi\|... - gi\|26246577\|ref\|NP_752616.1\| carbon starvation protein A [Escherichia coli CFT073], gi\|26106976\|gb\|A... gi\|237707428, gi... - gi\|237707428\|ref\|ZP_04537909.1\| carbon starvation protein A [Escherichia sp. 3_2_53FAA], gi\|22689863... gi\|218368958, gi... - gi\|218698972\|ref\|YP_002406601.1\| carbon starvation protein [Escherichia coli IAI39], gi\|218368958\|em... gi\|227884421, gi... - gi\|227884421\|ref\|ZP_04002226.1\| carbon starvation protein A [Escherichia coli 83972], gi\|227838507\|g... gi\|218431030, gi... - gi\|218703933\|ref\|YP_002411452.1\| carbon starvation protein [Escherichia coli UMN026], gi\|218431030\|e... gi\|190907389, gi... - gi\|191172290\|ref\|ZP_03033832.1\| carbon starvation protein A [Escherichia coli F11], gi\|190907389\|gb\|... gi\|218557539, gi... - gi\|218557539\|ref\|YP_002390452.1\| carbon starvation protein [Escherichia coli S88], gi\|218364308\|emb\|...	0.0	[1..701]	[1..701]
gi\|168798155, gi... - gi\|189379257\|gb\|EDU97673.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|195936146 - gi\|195936146\|ref\|ZP_03081528.1\| carbon starvation protein [Escherichia coli O157:H7 str. EC4024] gi\|208809163, gi... - gi\|208809163\|ref\|ZP_03251500.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4206], ... gi\|15829891, gi\|... - gi\|15829891\|ref\|NP_308664.1\| carbon starvation protein [Escherichia coli O157:H7 str. Sakai], gi\|133... gi\|208815410, gi... - gi\|208815410\|ref\|ZP_03256589.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4045], ... gi\|209777476, gi... - pir\|\|A85559 carbon starvation protein [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189360888, gi... - gi\|189360888\|gb\|EDU79307.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|187769782, gi... - gi\|187769782\|gb\|EDU33626.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|12513491, gi\|... - gi\|15800313\|ref\|NP_286325.1\| carbon starvation protein [Escherichia coli O157:H7 EDL933], gi\|1251349... gi\|189003060, gi... - gi\|189003060\|gb\|EDU72046.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|15829891, gi\|... - gi\|15829891\|ref\|NP_308664.1\| carbon starvation protein [Escherichia coli O157:H7], gi\|13360095\|dbj\|B... gi\|189373685, gi... - gi\|189373685\|gb\|EDU92101.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|168747734, gi... - gi\|188017701\|gb\|EDU55823.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|189358027, gi... - gi\|189358027\|gb\|EDU76446.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|168760256, gi... - gi\|189369191\|gb\|EDU87607.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|254791765, gi... - gi\|254791765\|ref\|YP_003076602.1\| carbon starvation protein [Escherichia coli O157:H7 str. TW14359], ... gi\|208822849, gi... - gi\|208822849\|ref\|ZP_03263167.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4042], ... gi\|209398506, gi... - gi\|209398506\|ref\|YP_002269232.1\| carbon starvation protein A [Escherichia coli O157:H7 str. EC4115],... gi\|217320874, gi... - gi\|217324653\|ref\|ZP_03440737.1\| carbon starvation protein A [Escherichia coli O157:H7 str. TW14588],...	0.0	[1..701]	[1..701]
gi\|74311133, gi\|... - gi\|74311133\|ref\|YP_309552.1\| carbon starvation protein [Shigella sonnei Ss046], gi\|73854610\|gb\|AAZ87...	0.0	[1..701]	[1..701]
gi\|30040299, gi\|... - gi\|30062055\|ref\|NP_836226.1\| carbon starvation protein [Shigella flexneri 2a str. 2457T], gi\|3004029... gi\|24050751, gi\|... - gi\|24111943\|ref\|NP_706453.1\| carbon starvation protein [Shigella flexneri 2a str. 301], gi\|24050751\|...	0.0	[1..701]	[1..701]
gi\|167550871, gi... - gi\|205324139\|gb\|EDZ11978.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... gi\|205330944, gi... - gi\|205330944\|gb\|EDZ17708.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... gi\|16419111, gi\|... - gi\|16763977\|ref\|NP_459592.1\| carbon starvation protein [Salmonella typhimurium LT2], gi\|16419111\|gb\|... gi\|161615194, gi... - gi\|161615194\|ref\|YP_001589159.1\| hypothetical protein SPAB_02962 [Salmonella enterica subsp. enteric... gi\|206707869, gi... - gi\|207856066\|ref\|YP_002242717.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|224582433, gi... - gi\|224582433\|ref\|YP_002636231.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|198241952, gi... - gi\|198241952\|ref\|YP_002214594.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|200389766, gi... - gi\|200389766\|ref\|ZP_03216377.1\| carbon starvation protein A [Salmonella enterica subsp. enterica ser... gi\|197248133, gi... - gi\|197248133\|ref\|YP_002145574.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|197242780, gi... - gi\|197264525\|ref\|ZP_03164599.1\| carbon starvation protein A [Salmonella enterica subsp. enterica ser... gi\|194472762, gi... - gi\|194472762\|ref\|ZP_03078746.1\| carbon starvation protein A [Salmonella enterica subsp. enterica ser... gi\|194713457, gi... - gi\|194737955\|ref\|YP_002113718.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|194443275, gi... - gi\|194443275\|ref\|YP_002039841.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|194451073, gi... - gi\|194451073\|ref\|YP_002044632.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se... gi\|195631606, gi... - gi\|195631606\|gb\|EDX50126.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... gi\|168818781, gi... - gi\|205344258\|gb\|EDZ31022.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... gi\|168240439, gi... - gi\|205340317\|gb\|EDZ27081.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... gi\|238911551 - gi\|238911551\|ref\|ZP_04655388.1\| carbon starvation protein A [Salmonella enterica subsp. enterica ser... gi\|168260891, gi... - gi\|205349761\|gb\|EDZ36392.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... gi\|205334079, gi... - gi\|205334079\|gb\|EDZ20843.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=cstA] [protein=carbon starvation protein] [protein_id=YP_005236307.1] [location=661968..664073... gi\|168236587, gi... - gi\|197290276\|gb\|EDY29632.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serovar...	0.0	[1..701]	[1..701]
gi\|56128520, gi\|... - gi\|56414263\|ref\|YP_151338.1\| carbon starvation protein A [Salmonella enterica subsp. enterica serova... gi\|197363186, gi... - gi\|197363186\|ref\|YP_002142823.1\| carbon starvation protein A [Salmonella enterica subsp. enterica se...	0.0	[1..701]	[1..701]
gi\|62179201, gi\|... - gi\|62179201\|ref\|YP_215618.1\| carbon starvation protein [Salmonella enterica subsp. enterica serovar ...	0.0	[1..701]	[1..699]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSGKYLVW TALSVLGAFA LGYIALNRGE QINALWIVVA SVCVYLIAYR FYGLYIAKKV  60
   61 LAVDPTRMTP AVRHNDGLDY VPTDKKVLFG HHFAAIAGAG PLVGPVLAAQ MGYLPGMIWL 120
  121 LAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVLAGAVQDF MVLFVSTRRD GRSLGELVKE EMGATAGVIV LVACFMIMVI ILAVLAMIVV  60
   61 KALTHSPWGT YTVAFTIPLA IFMGIYLRYL RPGRIGEVSV IGLVFLIFAI ISGGWVAASP 120
  121 TWAPY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [249-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDFTGVQLTW MLVGYGFVAA VLPVWLLLAP RDYLSTFLKI GTIVGLAVGI LIMRPTLTMP  60
   61 ALTKFVDGTG PVWTGDLFPF LFITIACGAV SGFHALISSG TTPKMLANEG QACFIGYGGM 120
  121 LMESFVAIMA LVSACIIDPG VYFAMNSPMA VLAPAG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [405-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TADVVASAAQ VVSSWGFAIT PDTLHQIANE VGEQSIISRA GGAPTLAVGM AYILHGALGG  60
   61 MMDVAFWYHF AILFEALFIL TAVDAGTRAA RFMLQDLLGV VSPGLKRTDS LPANLLATAL 120
  121 CVLAWGYFLH QGVVDPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [542-701]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGINTLWPLF GIANQMLAGM ALMLCAVVLF KMKRQRYAWV ALVPTAWLLI CTLTAGWQKA  60
   61 FSPDAKIGFL AIANKFQAMI DSGNIPPQYT ESQLAQLVFN NRLDAGLTIF FMVVVVVLAV 120
  121 FSIKTALAAL KIDKPTANET PYEPMPENVD EIVTQAKGAH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits